Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13445

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,040,918	+		PFLU_RS13440	0.66	-0.9
3,040,918	+		PFLU_RS13440	0.66	-1.8
3,040,919	-		PFLU_RS13440	0.67	+0.9
3,040,919	-		PFLU_RS13440	0.67	-0.4
3,040,969	+		PFLU_RS13440	0.70	+0.3
3,040,969	+		PFLU_RS13440	0.70	+0.1
3,040,970	-		PFLU_RS13440	0.70	-0.5
3,041,083	+		PFLU_RS13440	0.78	-1.8
3,041,084	-		PFLU_RS13440	0.78	-2.1
3,041,084	-		PFLU_RS13440	0.78	-2.6
3,041,104	+		PFLU_RS13440	0.79	+1.0
3,041,117	+		PFLU_RS13440	0.80	-0.0
3,041,146	+		PFLU_RS13440	0.82	+0.5
3,041,146	+		PFLU_RS13440	0.82	+0.0
3,041,146	+		PFLU_RS13440	0.82	+1.9
3,041,146	+		PFLU_RS13440	0.82	+1.6
3,041,147	-		PFLU_RS13440	0.82	+0.7
3,041,147	-		PFLU_RS13440	0.82	-0.1
3,041,147	-		PFLU_RS13440	0.82	+0.2
3,041,263	+		PFLU_RS13440	0.90	-1.6
3,041,282	+				-0.8
3,041,282	+				+0.2
3,041,283	-				-2.1
3,041,283	-				-0.1
3,041,283	-				-0.6
3,041,413	+				-0.7
3,041,413	+				+0.5
3,041,414	-				+0.6
3,041,414	-				-0.6
3,041,434	-				+0.2
3,041,479	+				+2.7
3,041,480	-				+0.6
3,041,502	-				+0.5
3,041,539	-				-0.9
3,041,542	+				+0.7
3,041,550	+				+1.2
3,041,561	+				-1.5
3,041,562	-				-0.3
3,041,571	-				+0.9
3,041,643	+				-0.5
3,041,644	-				-0.3
3,041,647	+				+1.0
3,041,647	+				+0.1
3,041,647	+				-2.4
3,041,647	+				-2.7
3,041,647	+				-0.3
3,041,647	+				+2.1
3,041,647	+				-1.4
3,041,648	-				-0.7
3,041,648	-				+2.0
3,041,648	-				-1.4
3,041,648	-				-0.7
3,041,648	-				-0.4
3,041,698	+				-3.3
3,041,698	+				+0.0
3,041,698	+				+1.8
3,041,699	-				+1.0
3,041,752	+				-0.1
3,041,752	+				+0.2
3,041,752	+				-0.1
3,041,752	+				+0.4
3,041,752	+				-0.2
3,041,753	-				+0.6
3,041,753	-				+0.3
3,041,753	-				+0.9
3,041,753	-				-2.1
3,041,756	+				-0.3
3,041,756	+				-1.2
3,041,757	-				+1.2
3,041,757	-				-0.8
3,041,858	+		PFLU_RS13445	0.11	-0.9
3,041,859	-		PFLU_RS13445	0.11	-0.1
3,041,998	+		PFLU_RS13445	0.17	+0.8
3,041,998	+		PFLU_RS13445	0.17	+1.1
3,041,998	+		PFLU_RS13445	0.17	-1.1
3,041,998	+		PFLU_RS13445	0.17	+0.9
3,041,999	-		PFLU_RS13445	0.18	+1.7
3,041,999	-		PFLU_RS13445	0.18	+0.5
3,041,999	-		PFLU_RS13445	0.18	+0.0
3,041,999	-		PFLU_RS13445	0.18	-0.1
3,042,040	+		PFLU_RS13445	0.19	+0.2
3,042,112	+		PFLU_RS13445	0.23	+0.2
3,042,113	-		PFLU_RS13445	0.23	-0.5
3,042,113	-		PFLU_RS13445	0.23	+0.6
3,042,113	-		PFLU_RS13445	0.23	+0.0
3,042,137	-		PFLU_RS13445	0.24	-0.7
3,042,140	+		PFLU_RS13445	0.24	-0.3
3,042,140	+		PFLU_RS13445	0.24	-0.4
3,042,141	-		PFLU_RS13445	0.24	+0.5
3,042,141	-		PFLU_RS13445	0.24	+0.0
3,042,141	-		PFLU_RS13445	0.24	+1.3
3,042,200	-		PFLU_RS13445	0.27	+2.5
3,042,200	-		PFLU_RS13445	0.27	-1.1
3,042,200	-		PFLU_RS13445	0.27	-2.1
3,042,471	+		PFLU_RS13445	0.40	-1.4
3,042,472	-		PFLU_RS13445	0.40	-0.8
3,042,529	-		PFLU_RS13445	0.43	+0.2
3,042,529	-		PFLU_RS13445	0.43	+0.9
3,042,529	-		PFLU_RS13445	0.43	+0.3
3,042,547	-		PFLU_RS13445	0.44	+2.5
3,042,576	+		PFLU_RS13445	0.45	+2.0
3,042,576	+		PFLU_RS13445	0.45	-0.1
3,042,577	-		PFLU_RS13445	0.45	+0.9
3,042,577	-		PFLU_RS13445	0.45	-1.3
3,042,577	-		PFLU_RS13445	0.45	+0.2
3,042,577	-		PFLU_RS13445	0.45	+1.3
3,042,603	-		PFLU_RS13445	0.46	+0.9
3,042,859	+		PFLU_RS13445	0.59	+0.2
3,042,859	+		PFLU_RS13445	0.59	+0.6
3,042,859	+		PFLU_RS13445	0.59	-0.8
3,042,859	+		PFLU_RS13445	0.59	+1.3
3,042,859	+		PFLU_RS13445	0.59	+1.9
3,042,859	+		PFLU_RS13445	0.59	-1.4
3,042,860	-		PFLU_RS13445	0.59	+0.9
3,042,860	-		PFLU_RS13445	0.59	-0.8
3,042,860	-		PFLU_RS13445	0.59	+0.4
3,042,860	-		PFLU_RS13445	0.59	+0.3
3,042,860	-		PFLU_RS13445	0.59	+0.7
3,042,889	+		PFLU_RS13445	0.60	+0.2
3,042,988	+		PFLU_RS13445	0.65	-1.7
3,042,988	+		PFLU_RS13445	0.65	+1.4
3,042,988	+		PFLU_RS13445	0.65	+1.5
3,042,988	+		PFLU_RS13445	0.65	-0.7
3,042,992	-		PFLU_RS13445	0.65	+0.7
3,043,092	+		PFLU_RS13445	0.70	+0.1
3,043,177	+		PFLU_RS13445	0.74	+0.4
3,043,177	+		PFLU_RS13445	0.74	+0.1
3,043,178	-		PFLU_RS13445	0.74	-0.8
3,043,432	+		PFLU_RS13445	0.86	-1.1
3,043,432	+		PFLU_RS13445	0.86	-1.4
3,043,433	-		PFLU_RS13445	0.86	+0.2
3,043,433	-		PFLU_RS13445	0.86	+0.9
3,043,433	-		PFLU_RS13445	0.86	+1.7
3,043,433	-		PFLU_RS13445	0.86	-1.6
3,043,433	-		PFLU_RS13445	0.86	-1.5
3,043,620	+				-1.8
3,043,620	+				-2.3
3,043,621	-				+0.4
3,043,621	-				+0.1
3,043,636	+				+1.4
3,043,637	-				+0.3
3,043,637	-				-1.1
3,043,637	-				-2.1
3,043,734	-				-0.2
3,043,879	+		PFLU_RS13450	0.13	+0.9
3,043,879	+		PFLU_RS13450	0.13	+0.4
3,043,879	+		PFLU_RS13450	0.13	+1.2
3,043,880	-		PFLU_RS13450	0.13	+0.1
3,044,061	+		PFLU_RS13450	0.37	+1.6
3,044,061	+		PFLU_RS13450	0.37	+0.4
3,044,061	+		PFLU_RS13450	0.37	-1.7
3,044,061	+		PFLU_RS13450	0.37	-1.7
3,044,242	+		PFLU_RS13450	0.61	-1.1
3,044,242	+		PFLU_RS13450	0.61	+0.2
3,044,242	+		PFLU_RS13450	0.61	+1.1
3,044,243	-		PFLU_RS13450	0.62	+1.2
3,044,243	-		PFLU_RS13450	0.62	-0.2
3,044,243	-		PFLU_RS13450	0.62	-1.1
3,044,243	-		PFLU_RS13450	0.62	-0.8
3,044,243	-		PFLU_RS13450	0.62	+0.9
3,044,252	-		PFLU_RS13450	0.63	+0.4
3,044,278	-		PFLU_RS13450	0.66	+1.5
3,044,347	+		PFLU_RS13450	0.76	-0.6
3,044,347	+		PFLU_RS13450	0.76	+0.5
3,044,347	+		PFLU_RS13450	0.76	+0.2
3,044,348	-		PFLU_RS13450	0.76	+0.5
3,044,348	-		PFLU_RS13450	0.76	+0.3
3,044,349	+		PFLU_RS13450	0.76	+0.6
3,044,349	+		PFLU_RS13450	0.76	-0.7
3,044,349	+		PFLU_RS13450	0.76	+0.5
3,044,349	+		PFLU_RS13450	0.76	-0.5
3,044,349	+		PFLU_RS13450	0.76	-0.7
3,044,349	+		PFLU_RS13450	0.76	-0.4
3,044,349	+		PFLU_RS13450	0.76	+1.7
3,044,349	+		PFLU_RS13450	0.76	-1.4
3,044,350	-		PFLU_RS13450	0.76	-1.1
3,044,350	-		PFLU_RS13450	0.76	+0.9
3,044,350	-		PFLU_RS13450	0.76	+0.6
3,044,350	-		PFLU_RS13450	0.76	-2.0
3,044,350	-		PFLU_RS13450	0.76	-0.7
3,044,350	-		PFLU_RS13450	0.76	+1.5
3,044,350	-		PFLU_RS13450	0.76	-0.4
3,044,350	-		PFLU_RS13450	0.76	+0.6
3,044,350	-		PFLU_RS13450	0.76	-0.3
3,044,353	+		PFLU_RS13450	0.76	+2.3
3,044,353	+		PFLU_RS13450	0.76	+0.8
3,044,353	+		PFLU_RS13450	0.76	-0.0
3,044,353	+		PFLU_RS13450	0.76	-0.1
3,044,353	+		PFLU_RS13450	0.76	+0.5
3,044,353	+		PFLU_RS13450	0.76	-0.5
3,044,353	+		PFLU_RS13450	0.76	-0.2
3,044,354	-		PFLU_RS13450	0.76	-0.0
3,044,354	-		PFLU_RS13450	0.76	-1.8
3,044,354	-		PFLU_RS13450	0.76	-1.0
3,044,354	-		PFLU_RS13450	0.76	+0.5
3,044,354	-		PFLU_RS13450	0.76	+0.9
3,044,354	-		PFLU_RS13450	0.76	+0.2
3,044,354	-		PFLU_RS13450	0.76	+0.2
3,044,354	-		PFLU_RS13450	0.76	+0.7
3,044,354	-		PFLU_RS13450	0.76	-0.3
3,044,460	+				+0.5
3,044,461	-				-1.8
3,044,461	-				+0.9
3,044,469	-				-0.1
3,044,469	-				+1.8
3,044,701	+				-1.1
3,044,701	+				-0.3
3,044,701	+				-0.5
3,044,701	+				+0.2
3,044,701	+				-0.3
3,044,702	-				+0.3
3,044,702	-				+0.2
3,044,702	-				+0.7
3,044,702	-				-1.6