Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13340

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
3,014,416	+		PFLU_RS13330	0.63	-0.3
3,014,417	-		PFLU_RS13330	0.63	+0.7
3,014,621	+		PFLU_RS13330	0.81	+1.1
3,014,621	+		PFLU_RS13330	0.81	-1.0
3,014,621	+		PFLU_RS13330	0.81	-2.7
3,014,622	-		PFLU_RS13330	0.82	+1.2
3,014,622	-		PFLU_RS13330	0.82	-0.5
3,014,750	+				-1.1
3,014,751	-				+1.0
3,014,751	-				+0.4
3,014,863	+		PFLU_RS13335	0.13	+0.8
3,014,863	+		PFLU_RS13335	0.13	-1.9
3,014,863	+		PFLU_RS13335	0.13	+0.9
3,014,864	-		PFLU_RS13335	0.13	+0.7
3,014,864	-		PFLU_RS13335	0.13	-0.4
3,014,866	+		PFLU_RS13335	0.13	-0.4
3,014,866	+		PFLU_RS13335	0.13	-0.6
3,014,867	-		PFLU_RS13335	0.13	+0.9
3,014,908	+		PFLU_RS13335	0.22	-0.4
3,014,908	+		PFLU_RS13335	0.22	+0.4
3,014,909	-		PFLU_RS13335	0.23	+0.3
3,014,909	-		PFLU_RS13335	0.23	+0.5
3,015,027	+		PFLU_RS13335	0.48	-1.9
3,015,027	+		PFLU_RS13335	0.48	+0.1
3,015,027	+		PFLU_RS13335	0.48	+0.6
3,015,027	+		PFLU_RS13335	0.48	+0.0
3,015,028	-		PFLU_RS13335	0.48	+0.6
3,015,028	-		PFLU_RS13335	0.48	-2.1
3,015,028	-		PFLU_RS13335	0.48	-2.7
3,015,028	-		PFLU_RS13335	0.48	-0.5
3,015,028	-		PFLU_RS13335	0.48	-1.0
3,015,028	-		PFLU_RS13335	0.48	-1.4
3,015,052	+		PFLU_RS13335	0.53	+1.3
3,015,053	-		PFLU_RS13335	0.54	+0.9
3,015,053	-		PFLU_RS13335	0.54	-0.1
3,015,053	-		PFLU_RS13335	0.54	-2.5
3,015,277	+				+0.3
3,015,321	+				-0.4
3,015,321	+				-1.3
3,015,325	-				+0.8
3,015,357	+				-1.8
3,015,357	+				-2.8
3,015,358	-				+0.3
3,015,358	-				-0.4
3,015,358	-				-0.8
3,015,358	-				+0.2
3,015,358	-				-0.4
3,015,360	+				+0.3
3,015,361	-				-1.3
3,015,392	+				-1.2
3,015,392	+				-0.4
3,015,467	+				-1.5
3,015,467	+				+0.0
3,015,467	+				-0.8
3,015,467	+				+0.2
3,015,468	-				-0.1
3,015,505	+				+0.3
3,015,505	+				+1.6
3,015,505	+				-0.9
3,015,506	-				-0.1
3,015,607	+		PFLU_RS13340	0.16	-1.7
3,015,607	+		PFLU_RS13340	0.16	+1.2
3,015,607	+		PFLU_RS13340	0.16	-0.0
3,015,608	-		PFLU_RS13340	0.16	+0.7
3,015,608	-		PFLU_RS13340	0.16	+0.5
3,015,613	+		PFLU_RS13340	0.16	+1.8
3,015,631	+		PFLU_RS13340	0.17	+0.4
3,015,715	+		PFLU_RS13340	0.22	-0.7
3,015,715	+		PFLU_RS13340	0.22	-0.3
3,015,715	+		PFLU_RS13340	0.22	-0.1
3,015,716	-		PFLU_RS13340	0.22	-3.3
3,015,795	+		PFLU_RS13340	0.27	-1.7
3,015,808	+		PFLU_RS13340	0.28	-0.1
3,015,827	+		PFLU_RS13340	0.29	-2.5
3,015,827	+		PFLU_RS13340	0.29	+2.6
3,015,827	+		PFLU_RS13340	0.29	-0.4
3,015,828	-		PFLU_RS13340	0.29	-0.7
3,015,944	+		PFLU_RS13340	0.37	-0.7
3,015,945	-		PFLU_RS13340	0.37	+0.5
3,016,082	+		PFLU_RS13340	0.45	+0.3
3,016,082	+		PFLU_RS13340	0.45	+0.6
3,016,083	-		PFLU_RS13340	0.45	-0.6
3,016,083	-		PFLU_RS13340	0.45	+3.2
3,016,083	-		PFLU_RS13340	0.45	-0.1
3,016,083	-		PFLU_RS13340	0.45	-0.4
3,016,083	-		PFLU_RS13340	0.45	-0.4
3,016,083	-		PFLU_RS13340	0.45	+0.1
3,016,083	-		PFLU_RS13340	0.45	-1.2
3,016,083	-		PFLU_RS13340	0.45	-0.7
3,016,083	-		PFLU_RS13340	0.45	+1.1
3,016,083	-		PFLU_RS13340	0.45	+0.7
3,016,171	+		PFLU_RS13340	0.51	-0.0
3,016,172	-		PFLU_RS13340	0.51	+0.2
3,016,189	+		PFLU_RS13340	0.52	-0.1
3,016,238	-		PFLU_RS13340	0.55	+1.2
3,016,321	+		PFLU_RS13340	0.60	-3.6
3,016,321	+		PFLU_RS13340	0.60	-0.4
3,016,321	+		PFLU_RS13340	0.60	-2.4
3,016,321	+		PFLU_RS13340	0.60	+0.4
3,016,322	-		PFLU_RS13340	0.61	-1.0
3,016,378	+		PFLU_RS13340	0.64	-0.9
3,016,379	-		PFLU_RS13340	0.64	+0.3
3,016,561	+		PFLU_RS13340	0.76	-0.4
3,016,562	-		PFLU_RS13340	0.76	+0.9
3,016,562	-		PFLU_RS13340	0.76	-0.3
3,016,589	+		PFLU_RS13340	0.77	-1.3
3,016,621	+		PFLU_RS13340	0.79	+0.8
3,016,622	-		PFLU_RS13340	0.79	-0.3
3,016,622	-		PFLU_RS13340	0.79	+0.6
3,016,622	-		PFLU_RS13340	0.79	-2.1
3,016,622	-		PFLU_RS13340	0.79	-2.5
3,016,626	+		PFLU_RS13340	0.80	-1.2
3,016,626	+		PFLU_RS13340	0.80	+0.1
3,016,627	-		PFLU_RS13340	0.80	-0.0
3,016,627	-		PFLU_RS13340	0.80	-0.3
3,016,627	-		PFLU_RS13340	0.80	-0.0
3,016,627	-		PFLU_RS13340	0.80	+0.5
3,016,627	-		PFLU_RS13340	0.80	-1.3
3,016,627	-		PFLU_RS13340	0.80	-0.1
3,016,627	-		PFLU_RS13340	0.80	+0.2
3,016,627	-		PFLU_RS13340	0.80	+1.4
3,016,627	-		PFLU_RS13340	0.80	-1.5
3,016,627	-		PFLU_RS13340	0.80	-0.7
3,016,651	+		PFLU_RS13340	0.81	-1.2
3,016,651	+		PFLU_RS13340	0.81	-0.1
3,016,651	+		PFLU_RS13340	0.81	-2.1
3,016,651	+		PFLU_RS13340	0.81	-1.1
3,016,652	-		PFLU_RS13340	0.81	-2.0
3,016,652	-		PFLU_RS13340	0.81	-0.1
3,016,652	-		PFLU_RS13340	0.81	+0.8
3,016,652	-		PFLU_RS13340	0.81	-0.2
3,016,652	-		PFLU_RS13340	0.81	+2.1
3,016,864	+				+0.3
3,016,864	+				-0.4
3,016,864	+				-3.2
3,016,864	+				+0.5
3,016,864	+				-3.3
3,016,864	+				-0.6
3,016,865	-				-0.6
3,016,865	-				-0.8
3,016,865	-				+0.5
3,016,865	-				+0.5
3,016,882	+				+1.2
3,016,882	+				+0.1
3,016,883	-				-1.7
3,016,883	-				-1.7
3,016,883	-				-0.7
3,016,970	+				+0.0
3,017,002	+				+0.3
3,017,003	-				-1.9
3,017,003	-				-0.0
3,017,003	-				-0.4
3,017,003	-				+0.4
3,017,003	-				-0.9
3,017,003	-				-0.0
3,017,003	-				+0.3
3,017,162	+				-2.5
3,017,533	+		PFLU_RS13345	0.57	+2.0
3,017,533	+		PFLU_RS13345	0.57	-2.1
3,017,533	+		PFLU_RS13345	0.57	+1.1
3,017,533	+		PFLU_RS13345	0.57	+1.5
3,017,533	+		PFLU_RS13345	0.57	+0.3
3,017,533	+		PFLU_RS13345	0.57	-0.1
3,017,533	+		PFLU_RS13345	0.57	-0.4
3,017,533	+		PFLU_RS13345	0.57	+0.5
3,017,533	+		PFLU_RS13345	0.57	+0.5
3,017,533	+		PFLU_RS13345	0.57	+0.3
3,017,533	+		PFLU_RS13345	0.57	-0.1
3,017,533	+		PFLU_RS13345	0.57	-0.2
3,017,533	+		PFLU_RS13345	0.57	-0.1
3,017,534	-		PFLU_RS13345	0.57	-0.3
3,017,534	-		PFLU_RS13345	0.57	+1.5
3,017,534	-		PFLU_RS13345	0.57	-0.9
3,017,534	-		PFLU_RS13345	0.57	-2.2
3,017,534	-		PFLU_RS13345	0.57	+1.3
3,017,534	-		PFLU_RS13345	0.57	-0.9
3,017,534	-		PFLU_RS13345	0.57	-0.1
3,017,534	-		PFLU_RS13345	0.57	+0.2
3,017,534	-		PFLU_RS13345	0.57	-0.3
3,017,534	-		PFLU_RS13345	0.57	+0.8
3,017,534	-		PFLU_RS13345	0.57	-0.5
3,017,555	+		PFLU_RS13345	0.60	-0.9
3,017,558	-		PFLU_RS13345	0.60	+0.9
3,017,558	-		PFLU_RS13345	0.60	-0.4
3,017,671	+		PFLU_RS13345	0.75	+0.7
3,017,678	-		PFLU_RS13345	0.76	+1.1
3,017,683	+		PFLU_RS13345	0.77	+0.4
3,017,684	-		PFLU_RS13345	0.77	+0.4
3,017,922	+		PFLU_RS13350	0.30	+1.1
3,017,923	-		PFLU_RS13350	0.31	+0.3