Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13175

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,976,626	+				-0.0
2,976,626	+				+0.9
2,976,627	-				+0.7
2,976,627	-				+1.3
2,976,627	-				-1.1
2,976,627	-				+1.2
2,976,722	+				+0.2
2,976,723	-				-1.6
2,976,723	-				+1.0
2,976,848	+		PFLU_RS13170	0.19	+0.8
2,976,848	+		PFLU_RS13170	0.19	+0.3
2,976,944	+		PFLU_RS13170	0.33	-1.7
2,976,944	+		PFLU_RS13170	0.33	+0.7
2,976,945	-		PFLU_RS13170	0.33	-0.4
2,976,945	-		PFLU_RS13170	0.33	+0.5
2,976,945	-		PFLU_RS13170	0.33	+0.0
2,976,945	-		PFLU_RS13170	0.33	-1.5
2,976,945	-		PFLU_RS13170	0.33	+1.4
2,976,973	+		PFLU_RS13170	0.37	+1.9
2,976,974	-		PFLU_RS13170	0.37	+1.2
2,976,989	+		PFLU_RS13170	0.39	+0.7
2,976,990	-		PFLU_RS13170	0.40	+0.7
2,977,058	+		PFLU_RS13170	0.49	+1.2
2,977,091	+		PFLU_RS13170	0.54	-1.6
2,977,184	-		PFLU_RS13170	0.68	+1.8
2,977,287	+		PFLU_RS13170	0.83	-0.7
2,977,304	+		PFLU_RS13170	0.86	-1.2
2,977,304	+		PFLU_RS13170	0.86	+0.1
2,977,304	+		PFLU_RS13170	0.86	+0.1
2,977,304	+		PFLU_RS13170	0.86	+0.2
2,977,305	-		PFLU_RS13170	0.86	-0.4
2,977,305	-		PFLU_RS13170	0.86	+0.3
2,977,305	-		PFLU_RS13170	0.86	-0.7
2,977,305	-		PFLU_RS13170	0.86	+1.6
2,977,305	-		PFLU_RS13170	0.86	+0.4
2,977,305	-		PFLU_RS13170	0.86	+0.3
2,977,356	+				+0.4
2,977,356	+				-1.9
2,977,356	+				+0.5
2,977,357	-				+0.3
2,977,357	-				+0.4
2,977,427	+				-1.1
2,977,427	+				-0.3
2,977,427	+				-1.1
2,977,428	-				+0.7
2,977,428	-				-0.4
2,977,429	+				-1.6
2,977,429	+				+1.4
2,977,429	+				-0.5
2,977,430	-				+1.2
2,977,430	-				+0.8
2,977,628	+		PFLU_RS13175	0.20	+0.3
2,977,628	+		PFLU_RS13175	0.20	+0.7
2,977,628	+		PFLU_RS13175	0.20	+1.5
2,977,628	+		PFLU_RS13175	0.20	+0.4
2,977,628	+		PFLU_RS13175	0.20	+0.4
2,977,629	-		PFLU_RS13175	0.20	+0.4
2,977,629	-		PFLU_RS13175	0.20	-1.9
2,977,629	-		PFLU_RS13175	0.20	-2.1
2,977,629	-		PFLU_RS13175	0.20	+2.3
2,977,629	-		PFLU_RS13175	0.20	+0.0
2,977,629	-		PFLU_RS13175	0.20	+0.9
2,977,679	+		PFLU_RS13175	0.27	-1.5
2,977,679	+		PFLU_RS13175	0.27	+0.8
2,977,679	+		PFLU_RS13175	0.27	+0.3
2,977,679	+		PFLU_RS13175	0.27	+0.7
2,977,679	+		PFLU_RS13175	0.27	+1.7
2,977,680	-		PFLU_RS13175	0.27	-0.5
2,977,796	+		PFLU_RS13175	0.43	+0.3
2,977,816	-		PFLU_RS13175	0.46	+0.0
2,977,816	-		PFLU_RS13175	0.46	+0.1
2,977,816	-		PFLU_RS13175	0.46	+1.5
2,977,912	+		PFLU_RS13175	0.58	+2.1
2,977,913	-		PFLU_RS13175	0.59	+0.4
2,977,913	-		PFLU_RS13175	0.59	+0.1
2,977,913	-		PFLU_RS13175	0.59	+1.5
2,977,913	-		PFLU_RS13175	0.59	-0.8
2,977,913	-		PFLU_RS13175	0.59	+1.9
2,977,913	-		PFLU_RS13175	0.59	+0.0
2,977,913	-		PFLU_RS13175	0.59	+0.7
2,978,086	+		PFLU_RS13175	0.82	+1.0
2,978,086	+		PFLU_RS13175	0.82	+1.7
2,978,086	+		PFLU_RS13175	0.82	+0.4
2,978,086	+		PFLU_RS13175	0.82	-1.7
2,978,087	-		PFLU_RS13175	0.82	-0.5
2,978,087	-		PFLU_RS13175	0.82	+1.2
2,978,087	-		PFLU_RS13175	0.82	-0.5
2,978,239	+				+0.3
2,978,239	+				+0.9
2,978,239	+				+0.9
2,978,239	+				+1.5
2,978,239	+				-0.1
2,978,240	-				+0.4
2,978,240	-				+0.3
2,978,240	-				-1.5
2,978,240	-				-0.1
2,978,240	-				-0.2
2,978,240	-				+0.3
2,978,243	+				-0.0
2,978,243	+				+0.8
2,978,243	+				+1.2
2,978,244	-				+0.2
2,978,244	-				-0.8
2,978,244	-				-1.3
2,978,244	-				-0.4
2,978,244	-				+0.1
2,978,251	+				+1.2
2,978,251	+				+1.9
2,978,251	+				+0.4
2,978,252	-				-0.2
2,978,252	-				-1.6
2,978,262	-				+1.8
2,978,278	+				-0.3
2,978,290	-				+0.5
2,978,290	-				+0.3
2,978,290	-				-0.5
2,978,297	-				+0.0
2,978,480	+		PFLU_RS13180	0.35	+0.9
2,978,581	+		PFLU_RS13180	0.53	-1.4
2,978,581	+		PFLU_RS13180	0.53	+1.2
2,978,582	-		PFLU_RS13180	0.53	+0.9
2,978,582	-		PFLU_RS13180	0.53	+1.4
2,978,582	-		PFLU_RS13180	0.53	+2.5
2,978,582	-		PFLU_RS13180	0.53	-1.3
2,978,748	+		PFLU_RS13180	0.83	+1.5
2,978,748	+		PFLU_RS13180	0.83	+0.7
2,978,748	+		PFLU_RS13180	0.83	+1.9
2,978,748	+		PFLU_RS13180	0.83	+0.3
2,978,749	-		PFLU_RS13180	0.84	-1.2
2,978,749	-		PFLU_RS13180	0.84	+1.3
2,978,840	+				-0.1
2,978,840	+				-0.4
2,978,840	+				+0.5
2,978,840	+				-0.9
2,978,841	-				+0.2
2,978,841	-				+0.5
2,978,841	-				+0.9
2,978,841	-				-0.3
2,978,841	-				+1.2
2,979,158	+		PFLU_RS13185	0.71	+1.1
2,979,158	+		PFLU_RS13185	0.71	-0.8
2,979,158	+		PFLU_RS13185	0.71	+0.8
2,979,158	+		PFLU_RS13185	0.71	-1.7
2,979,158	+		PFLU_RS13185	0.71	+0.5
2,979,158	+		PFLU_RS13185	0.71	+1.2
2,979,158	+		PFLU_RS13185	0.71	-1.6
2,979,158	+		PFLU_RS13185	0.71	-4.1
2,979,158	+		PFLU_RS13185	0.71	+0.7
2,979,158	+		PFLU_RS13185	0.71	-0.1
2,979,159	-		PFLU_RS13185	0.71	+0.3
2,979,159	-		PFLU_RS13185	0.71	+0.5
2,979,159	-		PFLU_RS13185	0.71	+0.1
2,979,159	-		PFLU_RS13185	0.71	-0.7
2,979,159	-		PFLU_RS13185	0.71	-0.8
2,979,159	-		PFLU_RS13185	0.71	+0.6
2,979,159	-		PFLU_RS13185	0.71	+0.0
2,979,159	-		PFLU_RS13185	0.71	+1.9
2,979,159	-		PFLU_RS13185	0.71	+0.0
2,979,172	+		PFLU_RS13185	0.74	+1.4
2,979,172	+		PFLU_RS13185	0.74	+0.7
2,979,172	+		PFLU_RS13185	0.74	-2.0
2,979,172	+		PFLU_RS13185	0.74	-3.2
2,979,173	-		PFLU_RS13185	0.74	+1.5
2,979,173	-		PFLU_RS13185	0.74	-0.1
2,979,173	-		PFLU_RS13185	0.74	+0.1
2,979,173	-		PFLU_RS13185	0.74	-0.6
2,979,173	-		PFLU_RS13185	0.74	+0.5
2,979,173	-		PFLU_RS13185	0.74	-1.1
2,979,173	-		PFLU_RS13185	0.74	+1.1