Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS10790

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,376,510	-		PFLU_RS30655	0.17	-1.2
2,376,526	+		PFLU_RS30655	0.21	-0.4
2,376,526	+		PFLU_RS30655	0.21	+0.7
2,376,526	+		PFLU_RS30655	0.21	+1.1
2,376,526	+		PFLU_RS30655	0.21	+0.3
2,376,526	+		PFLU_RS30655	0.21	-0.2
2,376,526	+		PFLU_RS30655	0.21	-0.2
2,376,527	-		PFLU_RS30655	0.21	+1.5
2,376,527	-		PFLU_RS30655	0.21	-1.3
2,376,551	+		PFLU_RS30655	0.26	+0.2
2,376,552	-		PFLU_RS30655	0.26	-0.2
2,376,552	-		PFLU_RS30655	0.26	-1.1
2,376,620	+		PFLU_RS30655	0.41	+1.0
2,376,620	+		PFLU_RS30655	0.41	-0.1
2,376,621	-		PFLU_RS30655	0.41	-0.6
2,376,760	+		PFLU_RS30655	0.70	-1.4
2,376,761	-		PFLU_RS30655	0.71	+2.8
2,376,761	-		PFLU_RS30655	0.71	-0.1
2,376,762	+		PFLU_RS30655	0.71	-0.2
2,376,762	+		PFLU_RS30655	0.71	-0.5
2,376,763	-		PFLU_RS30655	0.71	-0.8
2,376,763	-		PFLU_RS30655	0.71	+0.4
2,376,791	+		PFLU_RS30655	0.77	-1.6
2,376,797	+		PFLU_RS30655	0.78	-0.7
2,376,798	-		PFLU_RS30655	0.79	+0.6
2,376,798	-		PFLU_RS30655	0.79	-0.6
2,376,806	+		PFLU_RS30655	0.80	-1.6
2,376,807	-		PFLU_RS30655	0.80	+0.4
2,376,807	-		PFLU_RS30655	0.80	+0.8
2,376,807	-		PFLU_RS30655	0.80	-3.4
2,376,833	+		PFLU_RS30655	0.86	-0.6
2,376,834	-		PFLU_RS30655	0.86	+0.6
2,376,840	-		PFLU_RS30655	0.87	-0.0
2,376,840	-		PFLU_RS30655	0.87	-0.1
2,376,892	+				+1.0
2,376,898	+				-2.1
2,376,898	+				+1.0
2,376,898	+				-0.6
2,376,898	+				+0.9
2,376,898	+				-1.0
2,376,899	-				+0.7
2,376,899	-				+1.1
2,376,906	+				+0.4
2,376,906	+				-0.1
2,376,906	+				+0.4
2,376,906	+				+0.4
2,376,907	-				+0.0
2,376,907	-				+0.2
2,376,907	-				+4.4
2,376,918	+				-0.1
2,376,918	+				+0.6
2,376,918	+				+2.1
2,376,918	+				-0.8
2,376,918	+				-1.0
2,376,918	+				-0.3
2,376,918	+				+0.6
2,376,918	+				+0.1
2,376,918	+				-0.6
2,376,918	+				+0.2
2,376,918	+				-0.7
2,376,919	-				-1.8
2,376,919	-				-0.1
2,376,919	-				+1.0
2,376,919	-				-0.3
2,376,923	-				+0.4
2,376,995	+		PFLU_RS30660	0.39	-1.0
2,376,995	+		PFLU_RS30660	0.39	+0.8
2,377,102	-				+1.8
2,377,102	-				+0.9
2,377,109	-				-1.0
2,377,109	-				-0.1
2,377,109	-				-1.6
2,377,110	+				-1.1
2,377,110	+				-0.4
2,377,110	+				+0.7
2,377,110	+				+0.7
2,377,110	+				-0.1
2,377,110	+				-2.0
2,377,110	+				-0.3
2,377,110	+				-0.2
2,377,110	+				+2.4
2,377,110	+				+2.3
2,377,111	-				-2.3
2,377,111	-				+1.3
2,377,111	-				-1.0
2,377,111	-				-1.8
2,377,111	-				+0.6
2,377,111	-				-0.8
2,377,111	-				+1.5
2,377,111	-				-0.5
2,377,114	+				+1.1
2,377,114	+				-0.5
2,377,114	+				-0.5
2,377,114	+				+1.6
2,377,114	+				+0.6
2,377,114	+				+1.0
2,377,114	+				+0.5
2,377,114	+				+0.4
2,377,114	+				+0.9
2,377,114	+				-0.9
2,377,115	-				-0.1
2,377,115	-				+0.9
2,377,115	-				-2.2
2,377,115	-				+0.1
2,377,115	-				-0.4
2,377,115	-				+0.3
2,377,115	-				-2.2
2,377,136	+				-0.6
2,377,151	+				+0.6
2,377,152	-				+1.8
2,377,152	-				-0.6
2,377,204	-				-0.6
2,377,223	+				+2.2
2,377,223	+				-1.5
2,377,224	-				+0.3
2,377,224	-				-0.6
2,377,224	-				-0.6
2,377,237	+				+1.4
2,377,237	+				-2.6
2,377,238	-				+1.4
2,377,238	-				-0.6
2,377,238	-				-0.2
2,377,241	+				-1.4
2,377,241	+				-0.4
2,377,242	-				-0.9
2,377,242	-				+1.7
2,377,303	-				+0.6
2,377,325	+				+1.6
2,377,325	+				-0.2
2,377,349	+				+0.4
2,377,349	+				+0.8
2,377,350	-				-0.1
2,377,350	-				+2.5
2,377,350	-				+0.2
2,377,354	-				-1.5
2,377,432	+				-0.5
2,377,433	-				-1.9
2,377,443	+				+0.2
2,377,444	-				-0.4
2,377,606	+		PFLU_RS10790	0.32	-0.2
2,377,606	+		PFLU_RS10790	0.32	-0.8
2,377,606	+		PFLU_RS10790	0.32	+0.0
2,377,606	+		PFLU_RS10790	0.32	+0.3
2,377,606	+		PFLU_RS10790	0.32	+0.4
2,377,607	-		PFLU_RS10790	0.33	+1.2
2,377,607	-		PFLU_RS10790	0.33	+1.0
2,377,607	-		PFLU_RS10790	0.33	+0.6
2,377,646	+		PFLU_RS10790	0.46	+0.0
2,377,646	+		PFLU_RS10790	0.46	-2.2
2,377,646	+		PFLU_RS10790	0.46	+1.9
2,377,647	-		PFLU_RS10790	0.46	-0.4
2,377,647	-		PFLU_RS10790	0.46	-0.6
2,377,647	-		PFLU_RS10790	0.46	-1.0
2,377,737	+		PFLU_RS10790	0.76	-1.2
2,377,875	+				+0.6
2,377,875	+				+0.5
2,377,875	+				-0.5
2,377,875	+				-0.7
2,377,875	+				-2.3
2,377,876	-				+0.5
2,377,876	-				-2.8
2,377,907	-		PFLU_RS10795	0.14	-1.1
2,377,907	-		PFLU_RS10795	0.14	+0.2
2,377,907	-		PFLU_RS10795	0.14	-0.2
2,377,907	-		PFLU_RS10795	0.14	+0.8
2,377,907	-		PFLU_RS10795	0.14	-0.3
2,377,907	-		PFLU_RS10795	0.14	+0.7
2,377,982	+		PFLU_RS10795	0.26	+1.5
2,377,982	+		PFLU_RS10795	0.26	+1.1
2,377,982	+		PFLU_RS10795	0.26	-0.8
2,377,982	+		PFLU_RS10795	0.26	+0.1
2,377,982	+		PFLU_RS10795	0.26	+0.7
2,377,982	+		PFLU_RS10795	0.26	+0.4
2,377,983	-		PFLU_RS10795	0.26	+0.0
2,378,004	+		PFLU_RS10795	0.30	+0.8
2,378,004	+		PFLU_RS10795	0.30	-1.9
2,378,005	-		PFLU_RS10795	0.30	-1.0
2,378,022	-		PFLU_RS10795	0.33	-0.5
2,378,022	-		PFLU_RS10795	0.33	+0.8
2,378,022	-		PFLU_RS10795	0.33	+1.4
2,378,203	+		PFLU_RS10795	0.62	-0.6
2,378,203	+		PFLU_RS10795	0.62	-0.2
2,378,203	+		PFLU_RS10795	0.62	-3.2
2,378,204	-		PFLU_RS10795	0.62	-0.4
2,378,204	-		PFLU_RS10795	0.62	+0.7
2,378,204	-		PFLU_RS10795	0.62	-1.7
2,378,204	-		PFLU_RS10795	0.62	+0.7
2,378,204	-		PFLU_RS10795	0.62	+1.4
2,378,204	-		PFLU_RS10795	0.62	+0.6
2,378,204	-		PFLU_RS10795	0.62	-0.5
2,378,204	-		PFLU_RS10795	0.62	-0.4
2,378,204	-		PFLU_RS10795	0.62	+1.0
2,378,204	-		PFLU_RS10795	0.62	-0.2
2,378,204	-		PFLU_RS10795	0.62	+2.0
2,378,204	-		PFLU_RS10795	0.62	-0.6
2,378,213	-		PFLU_RS10795	0.63	+1.1
2,378,304	+		PFLU_RS10795	0.78	+2.7
2,378,304	+		PFLU_RS10795	0.78	+0.5
2,378,305	-		PFLU_RS10795	0.78	-0.2
2,378,305	-		PFLU_RS10795	0.78	+1.2
2,378,310	+		PFLU_RS10795	0.79	-0.3
2,378,310	+		PFLU_RS10795	0.79	-1.5
2,378,310	+		PFLU_RS10795	0.79	-0.9
2,378,311	-		PFLU_RS10795	0.79	+0.7
2,378,358	+		PFLU_RS10795	0.87	+1.8
2,378,403	+				+1.6
2,378,403	+				-0.8
2,378,403	+				-1.2
2,378,403	+				-0.9
2,378,403	+				+1.8
2,378,403	+				-0.6
2,378,404	-				+0.4
2,378,415	+				+1.2
2,378,415	+				+1.7
2,378,415	+				+1.7
2,378,415	+				+0.5
2,378,416	-				-0.4
2,378,416	-				+0.2
2,378,416	-				-0.6
2,378,416	-				+0.4
2,378,416	-				-1.2
2,378,416	-				-0.2
2,378,416	-				-0.2
2,378,416	-				-0.0
2,378,419	+				-0.8
2,378,419	+				+1.2
2,378,419	+				+1.0
2,378,419	+				-1.6
2,378,420	-				+0.1
2,378,420	-				-1.9
2,378,420	-				-0.5
2,378,420	-				+0.4
2,378,420	-				+0.2
2,378,420	-				-1.2
2,378,435	+				+1.1
2,378,435	+				-0.4
2,378,436	-				-1.2
2,378,436	-				-1.0
2,378,436	-				+1.5
2,378,622	+				+0.2
2,378,622	+				-0.5
2,378,725	+		PFLU_RS10800	0.18	+0.2
2,378,726	-		PFLU_RS10800	0.18	-3.0
2,378,747	-		PFLU_RS10800	0.19	+0.1
2,378,747	-		PFLU_RS10800	0.19	-1.1
2,378,747	-		PFLU_RS10800	0.19	-0.2
2,378,747	-		PFLU_RS10800	0.19	+1.0