Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS09880

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
2,174,862	-		PFLU_RS09875	0.86	+0.5
2,174,862	-		PFLU_RS09875	0.86	-1.9
2,174,865	+		PFLU_RS09875	0.87	+0.3
2,174,865	+		PFLU_RS09875	0.87	-0.1
2,174,865	+		PFLU_RS09875	0.87	-0.5
2,174,866	-		PFLU_RS09875	0.87	+0.5
2,174,866	-		PFLU_RS09875	0.87	-0.1
2,174,907	-		PFLU_RS09875	0.90	+0.2
2,174,994	+				+1.2
2,174,995	-				+0.9
2,174,995	-				+0.7
2,174,995	-				+0.2
2,174,997	+				-0.1
2,174,998	-				-0.7
2,174,998	-				-0.1
2,175,029	+				-0.4
2,175,029	+				+0.9
2,175,029	+				+0.3
2,175,029	+				-0.9
2,175,029	+				+1.6
2,175,030	-				+0.6
2,175,030	-				+0.3
2,175,113	-				-0.1
2,175,141	+				-1.8
2,175,141	+				-1.0
2,175,141	+				+1.1
2,175,141	+				+0.8
2,175,141	+				+0.8
2,175,141	+				-0.2
2,175,141	+				-0.4
2,175,141	+				+0.1
2,175,141	+				-1.7
2,175,141	+				-1.9
2,175,141	+				-0.5
2,175,141	+				-0.9
2,175,142	-				-1.0
2,175,142	-				-1.6
2,175,142	-				-1.3
2,175,142	-				-1.3
2,175,142	-				-0.4
2,175,142	-				-0.7
2,175,142	-				+0.5
2,175,142	-				-1.1
2,175,142	-				+1.2
2,175,142	-				-0.1
2,175,162	+				-0.3
2,175,162	+				-1.0
2,175,179	-				-0.3
2,175,201	+				-0.5
2,175,201	+				+0.9
2,175,201	+				+0.1
2,175,201	+				-0.6
2,175,202	-				-0.6
2,175,202	-				-0.8
2,175,202	-				+1.2
2,175,202	-				+1.2
2,175,202	-				+0.6
2,175,209	+				+0.5
2,175,209	+				-1.0
2,175,209	+				-0.0
2,175,209	+				-1.0
2,175,210	-				+0.1
2,175,210	-				+0.0
2,175,210	-				-0.2
2,175,210	-				-1.5
2,175,210	-				-1.2
2,175,210	-				-2.3
2,175,355	+		PFLU_RS30590	0.71	+0.7
2,175,355	+		PFLU_RS30590	0.71	-0.0
2,175,362	-		PFLU_RS30590	0.74	+1.0
2,175,482	+				-0.2
2,175,482	+				-1.1
2,175,482	+				-1.7
2,175,482	+				+0.3
2,175,680	+				-0.1
2,175,680	+				+1.9
2,175,681	-				-0.1
2,175,715	+				+0.3
2,175,716	-				-0.9
2,175,738	+				+0.0
2,175,745	+				+0.4
2,175,745	+				-2.0
2,175,746	-				-0.7
2,175,746	-				-0.0
2,175,746	-				+1.2
2,175,785	+				-0.3
2,175,785	+				+0.2
2,175,785	+				-0.8
2,175,786	-				-1.6
2,175,786	-				+0.7
2,175,786	-				+0.7
2,175,836	+		PFLU_RS09880	0.25	+0.5
2,175,836	+		PFLU_RS09880	0.25	+0.5
2,175,836	+		PFLU_RS09880	0.25	-2.9
2,175,837	-		PFLU_RS09880	0.26	+1.1
2,175,837	-		PFLU_RS09880	0.26	-1.8
2,175,837	-		PFLU_RS09880	0.26	-0.3
2,175,846	+		PFLU_RS09880	0.29	-0.5
2,175,847	-		PFLU_RS09880	0.30	-0.4
2,175,847	-		PFLU_RS09880	0.30	+0.7
2,175,847	-		PFLU_RS09880	0.30	-1.1
2,175,849	+		PFLU_RS09880	0.30	+1.1
2,175,849	+		PFLU_RS09880	0.30	+0.3
2,175,849	+		PFLU_RS09880	0.30	+0.4
2,175,849	+		PFLU_RS09880	0.30	-0.4
2,175,849	+		PFLU_RS09880	0.30	-1.5
2,175,850	-		PFLU_RS09880	0.31	+0.1
2,175,850	-		PFLU_RS09880	0.31	-0.4
2,175,871	-		PFLU_RS09880	0.40	-0.1
2,175,914	+		PFLU_RS09880	0.57	+0.3
2,175,914	+		PFLU_RS09880	0.57	+0.0
2,175,914	+		PFLU_RS09880	0.57	+1.2
2,175,914	+		PFLU_RS09880	0.57	-0.2
2,175,915	-		PFLU_RS09880	0.58	-0.3
2,175,915	-		PFLU_RS09880	0.58	-0.6
2,175,915	-		PFLU_RS09880	0.58	-0.5
2,175,923	+		PFLU_RS09880	0.61	-2.1
2,175,923	+		PFLU_RS09880	0.61	-1.5
2,175,923	+		PFLU_RS09880	0.61	+0.2
2,175,923	+		PFLU_RS09880	0.61	+1.5
2,175,923	+		PFLU_RS09880	0.61	+1.3
2,175,924	-		PFLU_RS09880	0.61	-0.1
2,176,003	+				+0.3
2,176,004	-				-2.2
2,176,004	-				-0.1
2,176,004	-				+1.5
2,176,004	-				+2.8
2,176,054	+		PFLU_RS30595	0.24	-1.7
2,176,054	+		PFLU_RS30595	0.24	-1.5
2,176,054	+		PFLU_RS30595	0.24	+0.4
2,176,054	+		PFLU_RS30595	0.24	-0.1
2,176,054	+		PFLU_RS30595	0.24	+0.5
2,176,055	-		PFLU_RS30595	0.24	+0.7
2,176,055	-		PFLU_RS30595	0.24	+1.1
2,176,092	+		PFLU_RS30595	0.50	+0.1
2,176,092	+		PFLU_RS30595	0.50	-0.5
2,176,093	-		PFLU_RS30595	0.51	+1.3
2,176,093	-		PFLU_RS30595	0.51	+0.8
2,176,093	-		PFLU_RS30595	0.51	+0.1
2,176,111	-		PFLU_RS30595	0.63	-0.9
2,176,152	+				-0.1
2,176,153	-				+0.0
2,176,153	-				-1.3
2,176,153	-				-1.2
2,176,153	-				+0.5
2,176,153	-				-0.0
2,176,198	+		PFLU_RS31505	0.11	+1.1
2,176,198	+		PFLU_RS31505	0.11	+0.8
2,176,198	+		PFLU_RS31505	0.11	+1.1
2,176,198	+		PFLU_RS31505	0.11	-0.1
2,176,198	+		PFLU_RS31505	0.11	-0.7
2,176,198	+		PFLU_RS31505	0.11	+0.6
2,176,198	+		PFLU_RS31505	0.11	+1.1
2,176,198	+		PFLU_RS31505	0.11	-0.4
2,176,199	-		PFLU_RS31505	0.12	+0.3
2,176,199	-		PFLU_RS31505	0.12	+0.5
2,176,199	-		PFLU_RS31505	0.12	-0.6
2,176,199	-		PFLU_RS31505	0.12	-0.5
2,176,199	-		PFLU_RS31505	0.12	-3.1
2,176,199	-		PFLU_RS31505	0.12	-2.1
2,176,199	-		PFLU_RS31505	0.12	-1.9
2,176,199	-		PFLU_RS31505	0.12	+0.4
2,176,199	-		PFLU_RS31505	0.12	+1.5
2,176,200	+		PFLU_RS31505	0.12	-0.5
2,176,200	+		PFLU_RS31505	0.12	+0.2
2,176,200	+		PFLU_RS31505	0.12	+0.2
2,176,200	+		PFLU_RS31505	0.12	+0.0
2,176,201	-		PFLU_RS31505	0.13	+1.9
2,176,202	+		PFLU_RS31505	0.13	+1.9
2,176,202	+		PFLU_RS31505	0.13	+0.7
2,176,202	+		PFLU_RS31505	0.13	+0.2
2,176,202	+		PFLU_RS31505	0.13	-1.9
2,176,202	+		PFLU_RS31505	0.13	-0.9
2,176,202	+		PFLU_RS31505	0.13	+0.6
2,176,202	+		PFLU_RS31505	0.13	-0.3
2,176,202	+		PFLU_RS31505	0.13	+0.4
2,176,202	+		PFLU_RS31505	0.13	-4.2
2,176,202	+		PFLU_RS31505	0.13	-0.0
2,176,202	+		PFLU_RS31505	0.13	-0.0
2,176,202	+		PFLU_RS31505	0.13	+1.5
2,176,203	-		PFLU_RS31505	0.14	+0.1
2,176,203	-		PFLU_RS31505	0.14	+0.8
2,176,203	-		PFLU_RS31505	0.14	-0.3
2,176,203	-		PFLU_RS31505	0.14	+0.6
2,176,203	-		PFLU_RS31505	0.14	+1.5
2,176,203	-		PFLU_RS31505	0.14	-0.1
2,176,203	-		PFLU_RS31505	0.14	-2.3
2,176,203	-		PFLU_RS31505	0.14	+0.3
2,176,203	-		PFLU_RS31505	0.14	-0.9
2,176,203	-		PFLU_RS31505	0.14	+1.0
2,176,203	-		PFLU_RS31505	0.14	+0.5
2,176,244	+		PFLU_RS31505	0.33	-0.5
2,176,245	-		PFLU_RS31505	0.33	-1.1
2,176,245	-		PFLU_RS31505	0.33	-1.1
2,176,245	-		PFLU_RS31505	0.33	+0.7
2,176,245	-		PFLU_RS31505	0.33	+0.2
2,176,403	+				+0.9
2,176,403	+				-2.4
2,176,404	-				-0.2
2,176,404	-				-0.1
2,176,404	-				+0.2
2,176,404	-				-0.5
2,176,442	-				+0.8
2,176,475	+		PFLU_RS30600	0.11	-2.9
2,176,475	+		PFLU_RS30600	0.11	-0.6
2,176,475	+		PFLU_RS30600	0.11	+1.0
2,176,475	+		PFLU_RS30600	0.11	+0.8
2,176,475	+		PFLU_RS30600	0.11	+0.9
2,176,475	+		PFLU_RS30600	0.11	+0.6
2,176,475	+		PFLU_RS30600	0.11	+1.9
2,176,476	-		PFLU_RS30600	0.12	+1.2
2,176,476	-		PFLU_RS30600	0.12	+0.3
2,176,476	-		PFLU_RS30600	0.12	+0.3
2,176,476	-		PFLU_RS30600	0.12	+0.5
2,176,476	-		PFLU_RS30600	0.12	+0.9
2,176,476	-		PFLU_RS30600	0.12	+0.9
2,176,515	-		PFLU_RS30600	0.17	-2.4
2,176,597	+		PFLU_RS30600	0.30	+0.9
2,176,702	+		PFLU_RS30600	0.46	+0.7
2,176,702	+		PFLU_RS30600	0.46	+2.0
2,176,702	+		PFLU_RS30600	0.46	-0.3
2,176,703	-		PFLU_RS30600	0.46	-0.1
2,176,703	-		PFLU_RS30600	0.46	-0.5
2,176,703	-		PFLU_RS30600	0.46	+1.3
2,176,703	-		PFLU_RS30600	0.46	+0.7
2,176,735	+		PFLU_RS30600	0.51	+0.0
2,176,760	+		PFLU_RS30600	0.55	-1.9
2,176,760	+		PFLU_RS30600	0.55	+2.0
2,176,761	-		PFLU_RS30600	0.55	-1.9
2,176,802	+		PFLU_RS30600	0.61	-0.1
2,176,802	+		PFLU_RS30600	0.61	-2.0
2,176,802	+		PFLU_RS30600	0.61	+0.1
2,176,802	+		PFLU_RS30600	0.61	+3.7
2,176,802	+		PFLU_RS30600	0.61	+0.3
2,176,802	+		PFLU_RS30600	0.61	-0.1
2,176,802	+		PFLU_RS30600	0.61	-0.1
2,176,802	+		PFLU_RS30600	0.61	-2.6
2,176,802	+		PFLU_RS30600	0.61	+1.1
2,176,803	-		PFLU_RS30600	0.61	-0.2
2,176,803	-		PFLU_RS30600	0.61	-1.1
2,176,803	-		PFLU_RS30600	0.61	+1.3
2,176,803	-		PFLU_RS30600	0.61	+1.5
2,176,803	-		PFLU_RS30600	0.61	+0.0
2,176,849	+		PFLU_RS30600	0.68	-0.2
2,176,850	-		PFLU_RS30600	0.68	-0.1
2,176,850	-		PFLU_RS30600	0.68	-0.5
2,176,868	+		PFLU_RS30600	0.71	+1.1
2,176,868	+		PFLU_RS30600	0.71	-0.2
2,176,868	+		PFLU_RS30600	0.71	-1.2
2,176,868	+		PFLU_RS30600	0.71	+0.9
2,176,869	-		PFLU_RS30600	0.71	+0.0
2,176,869	-		PFLU_RS30600	0.71	+1.3
2,176,869	-		PFLU_RS30600	0.71	+1.6
2,176,869	-		PFLU_RS30600	0.71	+1.1
2,176,869	-		PFLU_RS30600	0.71	-1.5
2,176,869	-		PFLU_RS30600	0.71	+0.1
2,176,870	+		PFLU_RS30600	0.71	+1.0
2,176,870	+		PFLU_RS30600	0.71	+0.9
2,176,870	+		PFLU_RS30600	0.71	+1.3
2,176,870	+		PFLU_RS30600	0.71	-1.0
2,176,870	+		PFLU_RS30600	0.71	+0.6
2,176,870	+		PFLU_RS30600	0.71	-0.3
2,176,870	+		PFLU_RS30600	0.71	-0.2
2,176,870	+		PFLU_RS30600	0.71	+1.5
2,176,870	+		PFLU_RS30600	0.71	-0.2
2,176,871	-		PFLU_RS30600	0.71	+0.8
2,176,871	-		PFLU_RS30600	0.71	+0.5
2,176,871	-		PFLU_RS30600	0.71	+0.5
2,176,871	-		PFLU_RS30600	0.71	+1.2
2,176,871	-		PFLU_RS30600	0.71	-1.4
2,176,871	-		PFLU_RS30600	0.71	+0.1
2,176,871	-		PFLU_RS30600	0.71	+0.5
2,176,871	-		PFLU_RS30600	0.71	+1.6
2,176,871	-		PFLU_RS30600	0.71	+0.5
2,176,997	+				+1.4
2,176,997	+				+0.9
2,176,997	+				-1.6
2,177,005	-				-0.3
2,177,005	-				-0.5