Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07345

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,633,189	+		PFLU_RS07335	0.73	-0.2
1,633,213	+		PFLU_RS07335	0.76	+0.1
1,633,213	+		PFLU_RS07335	0.76	+0.5
1,633,485	+				+0.4
1,633,485	+				+1.1
1,633,587	+		PFLU_RS07340	0.22	+1.1
1,633,587	+		PFLU_RS07340	0.22	-0.8
1,633,587	+		PFLU_RS07340	0.22	+1.2
1,633,587	+		PFLU_RS07340	0.22	-1.0
1,633,587	+		PFLU_RS07340	0.22	+0.2
1,633,587	+		PFLU_RS07340	0.22	+1.0
1,633,587	+		PFLU_RS07340	0.22	+0.7
1,633,587	+		PFLU_RS07340	0.22	-1.7
1,633,587	+		PFLU_RS07340	0.22	+0.7
1,633,587	+		PFLU_RS07340	0.22	-0.6
1,633,587	+		PFLU_RS07340	0.22	-0.9
1,633,587	+		PFLU_RS07340	0.22	-1.3
1,633,587	+		PFLU_RS07340	0.22	-0.7
1,633,587	+		PFLU_RS07340	0.22	+0.0
1,633,587	+		PFLU_RS07340	0.22	+1.3
1,633,587	+		PFLU_RS07340	0.22	+0.2
1,633,588	-		PFLU_RS07340	0.22	-1.9
1,633,588	-		PFLU_RS07340	0.22	-0.7
1,633,588	-		PFLU_RS07340	0.22	+0.7
1,633,588	-		PFLU_RS07340	0.22	-1.8
1,633,588	-		PFLU_RS07340	0.22	-0.7
1,633,588	-		PFLU_RS07340	0.22	+0.2
1,633,588	-		PFLU_RS07340	0.22	-2.0
1,633,641	+		PFLU_RS07340	0.29	-1.6
1,633,641	+		PFLU_RS07340	0.29	-0.2
1,633,642	-		PFLU_RS07340	0.29	+2.1
1,633,737	+		PFLU_RS07340	0.42	+1.5
1,633,737	+		PFLU_RS07340	0.42	+0.3
1,633,737	+		PFLU_RS07340	0.42	+1.3
1,633,737	+		PFLU_RS07340	0.42	-2.2
1,633,737	+		PFLU_RS07340	0.42	+1.6
1,633,737	+		PFLU_RS07340	0.42	-0.1
1,633,737	+		PFLU_RS07340	0.42	+1.1
1,633,737	+		PFLU_RS07340	0.42	-0.3
1,633,737	+		PFLU_RS07340	0.42	-0.8
1,633,737	+		PFLU_RS07340	0.42	+0.9
1,633,737	+		PFLU_RS07340	0.42	-0.2
1,633,737	+		PFLU_RS07340	0.42	-1.7
1,633,737	+		PFLU_RS07340	0.42	-2.3
1,633,737	+		PFLU_RS07340	0.42	-0.6
1,633,737	+		PFLU_RS07340	0.42	-1.6
1,633,737	+		PFLU_RS07340	0.42	+1.9
1,633,737	+		PFLU_RS07340	0.42	+1.7
1,633,738	-		PFLU_RS07340	0.42	-1.4
1,633,738	-		PFLU_RS07340	0.42	+1.7
1,633,738	-		PFLU_RS07340	0.42	-1.5
1,633,738	-		PFLU_RS07340	0.42	-0.2
1,633,738	-		PFLU_RS07340	0.42	+0.0
1,633,738	-		PFLU_RS07340	0.42	+0.3
1,633,738	-		PFLU_RS07340	0.42	+0.4
1,633,738	-		PFLU_RS07340	0.42	-0.3
1,633,738	-		PFLU_RS07340	0.42	-1.5
1,633,738	-		PFLU_RS07340	0.42	-0.8
1,633,738	-		PFLU_RS07340	0.42	+0.8
1,633,761	+		PFLU_RS07340	0.45	+0.1
1,633,761	+		PFLU_RS07340	0.45	-0.0
1,633,761	+		PFLU_RS07340	0.45	-0.6
1,633,761	+		PFLU_RS07340	0.45	+0.6
1,634,049	+		PFLU_RS07340	0.83	-0.4
1,634,068	+		PFLU_RS07340	0.85	-0.4
1,634,068	+		PFLU_RS07340	0.85	-0.6
1,634,068	+		PFLU_RS07340	0.85	-1.3
1,634,068	+		PFLU_RS07340	0.85	+1.1
1,634,069	-		PFLU_RS07340	0.85	-1.9
1,634,069	-		PFLU_RS07340	0.85	+0.9
1,634,071	-		PFLU_RS07340	0.86	-0.4
1,634,226	-				-1.8
1,634,276	+				-0.4
1,634,367	-		PFLU_RS07345	0.14	-0.9
1,634,441	+		PFLU_RS07345	0.20	+0.8
1,634,441	+		PFLU_RS07345	0.20	+0.4
1,634,441	+		PFLU_RS07345	0.20	+1.3
1,634,441	+		PFLU_RS07345	0.20	+0.0
1,634,441	+		PFLU_RS07345	0.20	-1.6
1,634,441	+		PFLU_RS07345	0.20	+0.5
1,634,441	+		PFLU_RS07345	0.20	-0.5
1,634,441	+		PFLU_RS07345	0.20	+0.7
1,634,441	+		PFLU_RS07345	0.20	-2.5
1,634,441	+		PFLU_RS07345	0.20	+0.3
1,634,441	+		PFLU_RS07345	0.20	+1.0
1,634,441	+		PFLU_RS07345	0.20	-1.5
1,634,441	+		PFLU_RS07345	0.20	-0.2
1,634,441	+		PFLU_RS07345	0.20	+1.6
1,634,441	+		PFLU_RS07345	0.20	+0.6
1,634,441	+		PFLU_RS07345	0.20	-2.3
1,634,441	+		PFLU_RS07345	0.20	-0.1
1,634,442	-		PFLU_RS07345	0.20	+0.5
1,634,442	-		PFLU_RS07345	0.20	+0.1
1,634,442	-		PFLU_RS07345	0.20	+1.0
1,634,442	-		PFLU_RS07345	0.20	+0.7
1,634,442	-		PFLU_RS07345	0.20	+2.2
1,634,442	-		PFLU_RS07345	0.20	-1.5
1,634,442	-		PFLU_RS07345	0.20	+0.5
1,634,442	-		PFLU_RS07345	0.20	-0.3
1,634,442	-		PFLU_RS07345	0.20	+0.1
1,634,442	-		PFLU_RS07345	0.20	-0.0
1,634,442	-		PFLU_RS07345	0.20	-0.9
1,634,442	-		PFLU_RS07345	0.20	-0.2
1,634,484	+		PFLU_RS07345	0.23	-0.6
1,634,484	+		PFLU_RS07345	0.23	-2.2
1,634,484	+		PFLU_RS07345	0.23	-0.9
1,634,484	+		PFLU_RS07345	0.23	-1.8
1,634,484	+		PFLU_RS07345	0.23	-1.0
1,634,484	+		PFLU_RS07345	0.23	-0.0
1,634,484	+		PFLU_RS07345	0.23	+1.7
1,634,485	-		PFLU_RS07345	0.23	+1.4
1,634,513	+		PFLU_RS07345	0.26	+1.7
1,634,513	+		PFLU_RS07345	0.26	+0.9
1,634,513	+		PFLU_RS07345	0.26	+0.0
1,634,514	-		PFLU_RS07345	0.26	-1.4
1,634,705	+		PFLU_RS07345	0.40	+0.9
1,634,706	-		PFLU_RS07345	0.40	-0.1
1,634,706	-		PFLU_RS07345	0.40	+1.2
1,634,706	-		PFLU_RS07345	0.40	+2.0
1,634,720	+		PFLU_RS07345	0.41	+0.2
1,634,720	+		PFLU_RS07345	0.41	-1.9
1,634,720	+		PFLU_RS07345	0.41	+0.8
1,634,721	-		PFLU_RS07345	0.42	-0.6
1,634,721	-		PFLU_RS07345	0.42	+2.0
1,634,883	+		PFLU_RS07345	0.54	+0.7
1,634,950	+		PFLU_RS07345	0.59	-0.8
1,634,950	+		PFLU_RS07345	0.59	+1.3
1,634,950	+		PFLU_RS07345	0.59	-1.5
1,634,950	+		PFLU_RS07345	0.59	+0.3
1,634,950	+		PFLU_RS07345	0.59	-0.1
1,634,950	+		PFLU_RS07345	0.59	-1.0
1,634,950	+		PFLU_RS07345	0.59	+0.9
1,634,950	+		PFLU_RS07345	0.59	-0.9
1,634,950	+		PFLU_RS07345	0.59	-0.1
1,634,950	+		PFLU_RS07345	0.59	+0.8
1,634,950	+		PFLU_RS07345	0.59	+0.8
1,634,950	+		PFLU_RS07345	0.59	-0.1
1,634,951	-		PFLU_RS07345	0.59	-0.2
1,634,951	-		PFLU_RS07345	0.59	+2.0
1,634,951	-		PFLU_RS07345	0.59	+0.5
1,634,951	-		PFLU_RS07345	0.59	+0.8
1,634,951	-		PFLU_RS07345	0.59	+0.9
1,634,963	+		PFLU_RS07345	0.60	+1.1
1,634,988	+		PFLU_RS07345	0.62	+1.0
1,634,988	+		PFLU_RS07345	0.62	-0.8
1,634,989	-		PFLU_RS07345	0.62	+1.0
1,634,989	-		PFLU_RS07345	0.62	-1.1
1,635,023	+		PFLU_RS07345	0.65	+0.2
1,635,023	+		PFLU_RS07345	0.65	-0.7
1,635,024	-		PFLU_RS07345	0.65	-1.1
1,635,024	-		PFLU_RS07345	0.65	+0.5
1,635,024	-		PFLU_RS07345	0.65	+1.5
1,635,024	-		PFLU_RS07345	0.65	+1.3
1,635,024	-		PFLU_RS07345	0.65	-1.8
1,635,062	+		PFLU_RS07345	0.68	+1.4
1,635,062	+		PFLU_RS07345	0.68	+1.2
1,635,062	+		PFLU_RS07345	0.68	+0.3
1,635,063	-		PFLU_RS07345	0.68	-1.2
1,635,063	-		PFLU_RS07345	0.68	+0.4
1,635,063	-		PFLU_RS07345	0.68	+0.7
1,635,248	+		PFLU_RS07345	0.82	+0.9
1,635,248	+		PFLU_RS07345	0.82	+0.8
1,635,248	+		PFLU_RS07345	0.82	+1.3
1,635,248	+		PFLU_RS07345	0.82	+0.3
1,635,248	+		PFLU_RS07345	0.82	-0.0
1,635,248	+		PFLU_RS07345	0.82	+1.3
1,635,249	-		PFLU_RS07345	0.82	+0.1
1,635,249	-		PFLU_RS07345	0.82	-0.3
1,635,249	-		PFLU_RS07345	0.82	+0.8
1,635,249	-		PFLU_RS07345	0.82	-2.2
1,635,249	-		PFLU_RS07345	0.82	+0.1
1,635,249	-		PFLU_RS07345	0.82	+1.5
1,635,249	-		PFLU_RS07345	0.82	-0.8
1,635,249	-		PFLU_RS07345	0.82	-1.1
1,635,249	-		PFLU_RS07345	0.82	+1.0
1,635,261	+		PFLU_RS07345	0.83	+0.8
1,635,261	+		PFLU_RS07345	0.83	-0.7
1,635,262	-		PFLU_RS07345	0.83	-0.5
1,635,262	-		PFLU_RS07345	0.83	-0.2
1,635,262	-		PFLU_RS07345	0.83	-1.2
1,635,319	+		PFLU_RS07345	0.87	+0.3
1,635,320	-		PFLU_RS07345	0.87	+1.1
1,635,363	+				-0.1
1,635,365	+				-0.5
1,635,365	+				+0.0
1,635,365	+				+1.0
1,635,365	+				+1.0
1,635,366	-				+0.5
1,635,366	-				+0.2
1,635,366	-				-2.2
1,635,366	-				-0.1
1,635,366	-				-0.0
1,635,366	-				+0.2
1,635,366	-				-0.3
1,635,366	-				-1.1
1,635,366	-				-1.6
1,635,366	-				-0.0
1,635,375	-				-0.8
1,635,424	-				-1.1
1,635,477	+				+0.3
1,635,528	-				+0.3
1,635,704	+				-0.4
1,635,704	+				-0.5
1,635,704	+				+1.5
1,635,704	+				+0.3
1,635,704	+				-0.4
1,635,705	-				+0.3
1,635,705	-				+0.3
1,635,801	-				-1.2
1,635,972	+		PFLU_RS07350	0.33	+1.4
1,635,972	+		PFLU_RS07350	0.33	-1.7
1,635,973	-		PFLU_RS07350	0.33	-1.6
1,635,979	+		PFLU_RS07350	0.34	+0.2
1,635,979	+		PFLU_RS07350	0.34	-0.6
1,635,980	-		PFLU_RS07350	0.34	-2.5
1,636,174	+		PFLU_RS07350	0.61	-0.7
1,636,174	+		PFLU_RS07350	0.61	+1.2
1,636,175	-		PFLU_RS07350	0.61	-0.8
1,636,175	-		PFLU_RS07350	0.61	-3.0
1,636,175	-		PFLU_RS07350	0.61	+0.4
1,636,175	-		PFLU_RS07350	0.61	+0.5
1,636,175	-		PFLU_RS07350	0.61	-0.3
1,636,178	+		PFLU_RS07350	0.62	-0.1
1,636,178	+		PFLU_RS07350	0.62	-0.4
1,636,178	+		PFLU_RS07350	0.62	+1.6
1,636,178	+		PFLU_RS07350	0.62	+0.1
1,636,178	+		PFLU_RS07350	0.62	+0.1
1,636,178	+		PFLU_RS07350	0.62	+0.2
1,636,178	+		PFLU_RS07350	0.62	+1.2
1,636,178	+		PFLU_RS07350	0.62	-1.1
1,636,178	+		PFLU_RS07350	0.62	-0.5
1,636,179	-		PFLU_RS07350	0.62	-2.3
1,636,179	-		PFLU_RS07350	0.62	+1.1
1,636,179	-		PFLU_RS07350	0.62	-1.8
1,636,267	+		PFLU_RS07350	0.74	+0.7
1,636,441	+				+0.4
1,636,442	-				-0.9
1,636,460	+				+0.6
1,636,460	+				+0.7
1,636,461	-				+0.3