Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS07140

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,594,638	-		PFLU_RS07135	0.38	+0.7
1,594,643	+		PFLU_RS07135	0.39	-1.7
1,594,785	+		PFLU_RS07135	0.53	-0.6
1,594,785	+		PFLU_RS07135	0.53	-0.1
1,594,786	-		PFLU_RS07135	0.53	-0.7
1,594,786	-		PFLU_RS07135	0.53	-0.2
1,594,786	-		PFLU_RS07135	0.53	-0.8
1,594,786	-		PFLU_RS07135	0.53	+0.3
1,594,912	+		PFLU_RS07135	0.65	-0.6
1,594,913	-		PFLU_RS07135	0.65	+0.4
1,594,964	+		PFLU_RS07135	0.70	-2.7
1,594,964	+		PFLU_RS07135	0.70	+1.1
1,594,965	-		PFLU_RS07135	0.70	+1.5
1,595,078	+		PFLU_RS07135	0.81	-3.0
1,595,078	+		PFLU_RS07135	0.81	-0.2
1,595,079	-		PFLU_RS07135	0.81	+1.2
1,595,079	-		PFLU_RS07135	0.81	+0.1
1,595,079	-		PFLU_RS07135	0.81	-2.0
1,595,178	+				+0.3
1,595,178	+				+1.5
1,595,178	+				+0.0
1,595,178	+				+0.5
1,595,178	+				+0.3
1,595,178	+				-1.1
1,595,178	+				+0.2
1,595,178	+				-1.1
1,595,178	+				-0.5
1,595,178	+				-0.1
1,595,178	+				+0.8
1,595,178	+				-0.8
1,595,179	-				+0.5
1,595,179	-				-0.2
1,595,179	-				-1.0
1,595,179	-				+2.1
1,595,179	-				-2.5
1,595,179	-				-0.0
1,595,179	-				-0.5
1,595,179	-				-1.2
1,595,179	-				-1.6
1,595,179	-				-0.8
1,595,179	-				-1.2
1,595,254	+				+0.1
1,595,254	+				-2.1
1,595,309	-				+0.4
1,595,451	+		PFLU_RS07140	0.12	-0.2
1,595,451	+		PFLU_RS07140	0.12	+1.8
1,595,451	+		PFLU_RS07140	0.12	-1.1
1,595,452	-		PFLU_RS07140	0.12	+0.1
1,595,452	-		PFLU_RS07140	0.12	-1.3
1,595,453	+		PFLU_RS07140	0.12	-0.0
1,595,453	+		PFLU_RS07140	0.12	-2.6
1,595,454	-		PFLU_RS07140	0.12	+0.4
1,595,454	-		PFLU_RS07140	0.12	-0.2
1,595,454	-		PFLU_RS07140	0.12	-1.7
1,595,454	-		PFLU_RS07140	0.12	+0.8
1,595,503	+		PFLU_RS07140	0.16	+0.8
1,595,504	-		PFLU_RS07140	0.16	+0.2
1,595,504	-		PFLU_RS07140	0.16	-0.1
1,595,563	+		PFLU_RS07140	0.20	+0.5
1,595,563	+		PFLU_RS07140	0.20	+0.1
1,595,564	-		PFLU_RS07140	0.20	-0.1
1,595,758	+		PFLU_RS07140	0.33	+0.8
1,595,758	+		PFLU_RS07140	0.33	-1.0
1,595,759	-		PFLU_RS07140	0.33	-0.7
1,595,789	+		PFLU_RS07140	0.35	+0.7
1,595,789	+		PFLU_RS07140	0.35	+1.9
1,595,904	-		PFLU_RS07140	0.42	-0.4
1,595,938	+		PFLU_RS07140	0.44	+2.6
1,595,938	+		PFLU_RS07140	0.44	+0.3
1,595,938	+		PFLU_RS07140	0.44	+0.7
1,595,938	+		PFLU_RS07140	0.44	-0.3
1,595,938	+		PFLU_RS07140	0.44	-0.2
1,595,938	+		PFLU_RS07140	0.44	+0.7
1,595,938	+		PFLU_RS07140	0.44	-0.1
1,595,938	+		PFLU_RS07140	0.44	+0.5
1,595,938	+		PFLU_RS07140	0.44	+0.1
1,595,938	+		PFLU_RS07140	0.44	-1.7
1,595,938	+		PFLU_RS07140	0.44	-1.0
1,595,938	+		PFLU_RS07140	0.44	+0.5
1,595,938	+		PFLU_RS07140	0.44	+0.5
1,595,938	+		PFLU_RS07140	0.44	-0.7
1,595,939	-		PFLU_RS07140	0.44	-1.7
1,595,939	-		PFLU_RS07140	0.44	+1.2
1,595,939	-		PFLU_RS07140	0.44	+1.4
1,595,939	-		PFLU_RS07140	0.44	+2.2
1,595,939	-		PFLU_RS07140	0.44	+0.5
1,595,939	-		PFLU_RS07140	0.44	-0.5
1,595,939	-		PFLU_RS07140	0.44	+0.9
1,595,939	-		PFLU_RS07140	0.44	-1.0
1,595,939	-		PFLU_RS07140	0.44	-1.0
1,595,939	-		PFLU_RS07140	0.44	+0.5
1,595,960	+		PFLU_RS07140	0.46	-0.2
1,595,960	+		PFLU_RS07140	0.46	-3.0
1,595,960	+		PFLU_RS07140	0.46	+0.7
1,595,960	+		PFLU_RS07140	0.46	-0.2
1,595,960	+		PFLU_RS07140	0.46	+0.4
1,595,960	+		PFLU_RS07140	0.46	+0.5
1,595,961	-		PFLU_RS07140	0.46	-0.5
1,595,961	-		PFLU_RS07140	0.46	+1.6
1,595,961	-		PFLU_RS07140	0.46	-2.2
1,595,961	-		PFLU_RS07140	0.46	-1.1
1,595,961	-		PFLU_RS07140	0.46	+1.6
1,596,076	-		PFLU_RS07140	0.54	+1.0
1,596,076	-		PFLU_RS07140	0.54	-1.6
1,596,128	+		PFLU_RS07140	0.57	+0.0
1,596,128	+		PFLU_RS07140	0.57	-3.3
1,596,129	-		PFLU_RS07140	0.57	-0.1
1,596,129	-		PFLU_RS07140	0.57	+0.7
1,596,327	+		PFLU_RS07140	0.70	-3.0
1,596,365	+		PFLU_RS07140	0.73	-0.8
1,596,365	+		PFLU_RS07140	0.73	-0.2
1,596,366	-		PFLU_RS07140	0.73	-1.0
1,596,501	+		PFLU_RS07140	0.82	+0.6
1,596,502	-		PFLU_RS07140	0.82	-0.7
1,596,502	-		PFLU_RS07140	0.82	-0.2
1,596,546	-		PFLU_RS07140	0.85	-0.2
1,596,556	+		PFLU_RS07140	0.85	+0.4
1,596,556	+		PFLU_RS07140	0.85	-1.7
1,596,556	+		PFLU_RS07140	0.85	+1.4
1,596,571	+		PFLU_RS07140	0.86	-1.9
1,596,572	-		PFLU_RS07140	0.86	+1.1
1,596,572	-		PFLU_RS07140	0.86	-0.4
1,596,572	-		PFLU_RS07140	0.86	+0.1
1,596,727	+				-0.1
1,596,727	+				+0.7
1,596,727	+				-0.2
1,596,727	+				-0.5
1,596,728	-				+0.4
1,596,763	+				+0.3
1,596,763	+				+2.0
1,596,773	+				-0.4
1,596,773	+				-0.7
1,596,773	+				-2.6
1,596,773	+				-0.1
1,596,773	+				-0.6
1,596,773	+				+1.1
1,596,774	-				-0.1
1,596,774	-				+1.0
1,596,774	-				-0.5
1,596,774	-				+1.0
1,596,779	+				-1.0
1,596,780	-				-2.2
1,596,780	-				+1.7
1,596,848	+		PFLU_RS07145	0.15	+0.7
1,596,848	+		PFLU_RS07145	0.15	+0.3
1,596,849	-		PFLU_RS07145	0.15	+0.7
1,596,849	-		PFLU_RS07145	0.15	-1.1
1,596,849	-		PFLU_RS07145	0.15	+0.5
1,596,849	-		PFLU_RS07145	0.15	-1.6
1,596,905	+		PFLU_RS07145	0.27	+1.0
1,596,905	+		PFLU_RS07145	0.27	+1.6
1,596,906	-		PFLU_RS07145	0.27	-0.2
1,597,082	+		PFLU_RS07145	0.66	-0.2
1,597,082	+		PFLU_RS07145	0.66	+0.3
1,597,082	+		PFLU_RS07145	0.66	+1.7
1,597,082	+		PFLU_RS07145	0.66	-0.2
1,597,082	+		PFLU_RS07145	0.66	+0.8
1,597,082	+		PFLU_RS07145	0.66	+0.5
1,597,082	+		PFLU_RS07145	0.66	-0.7
1,597,082	+		PFLU_RS07145	0.66	-2.4
1,597,082	+		PFLU_RS07145	0.66	-0.2
1,597,082	+		PFLU_RS07145	0.66	-0.4
1,597,082	+		PFLU_RS07145	0.66	-1.6
1,597,082	+		PFLU_RS07145	0.66	+0.9
1,597,082	+		PFLU_RS07145	0.66	+1.7
1,597,082	+		PFLU_RS07145	0.66	+0.3
1,597,082	+		PFLU_RS07145	0.66	+0.1
1,597,082	+		PFLU_RS07145	0.66	-1.3
1,597,083	-		PFLU_RS07145	0.66	+1.7
1,597,083	-		PFLU_RS07145	0.66	+0.1
1,597,083	-		PFLU_RS07145	0.66	+0.1
1,597,083	-		PFLU_RS07145	0.66	+0.7
1,597,083	-		PFLU_RS07145	0.66	-1.0
1,597,083	-		PFLU_RS07145	0.66	-0.3
1,597,083	-		PFLU_RS07145	0.66	+1.1
1,597,083	-		PFLU_RS07145	0.66	-0.3
1,597,083	-		PFLU_RS07145	0.66	-0.1
1,597,083	-		PFLU_RS07145	0.66	-0.3
1,597,083	-		PFLU_RS07145	0.66	+0.8
1,597,149	-		PFLU_RS07145	0.80	+1.2
1,597,231	+				-0.0
1,597,231	+				+0.7
1,597,231	+				+0.1
1,597,231	+				-2.4
1,597,231	+				+0.3
1,597,231	+				-0.6
1,597,231	+				-2.1
1,597,231	+				-0.6
1,597,231	+				+0.5
1,597,231	+				+0.2
1,597,232	-				+1.1
1,597,232	-				-1.1
1,597,232	-				-0.1
1,597,232	-				+0.5
1,597,232	-				+0.1
1,597,232	-				+1.0
1,597,232	-				+2.3
1,597,232	-				+1.5
1,597,232	-				+0.3
1,597,232	-				+0.1
1,597,232	-				-1.6
1,597,232	-				+0.9
1,597,232	-				+0.6
1,597,239	+				+0.0
1,597,239	+				-1.9
1,597,240	-				-0.9
1,597,240	-				-1.7
1,597,240	-				+0.7
1,597,240	-				+0.7
1,597,240	-				-0.9
1,597,240	-				+0.6
1,597,240	-				+0.0
1,597,263	+				-0.0
1,597,263	+				-0.6
1,597,263	+				+0.7
1,597,263	+				+0.1
1,597,263	+				+0.1
1,597,263	+				-2.1
1,597,264	-				+0.0
1,597,264	-				-0.3
1,597,305	+				+1.1
1,597,306	-				-1.1
1,597,370	+				+0.2
1,597,406	+				-0.6
1,597,407	-				-1.5
1,597,430	+				-1.2
1,597,430	+				-0.4
1,597,430	+				+0.8
1,597,430	+				-0.7
1,597,430	+				-1.1
1,597,430	+				+1.0
1,597,430	+				-0.9
1,597,430	+				+0.4
1,597,430	+				+0.8
1,597,430	+				+0.6
1,597,430	+				-0.8
1,597,430	+				-2.1
1,597,430	+				+0.1
1,597,430	+				-0.3
1,597,430	+				-0.9
1,597,430	+				+1.5
1,597,430	+				-1.0
1,597,430	+				+1.0
1,597,431	-				+0.4
1,597,431	-				+1.2
1,597,431	-				-0.1
1,597,431	-				-0.3
1,597,431	-				-0.3
1,597,431	-				+0.7
1,597,431	-				-0.4
1,597,431	-				-0.7
1,597,544	+		PFLU_RS07150	0.18	+0.8
1,597,544	+		PFLU_RS07150	0.18	+0.3
1,597,545	-		PFLU_RS07150	0.18	+2.0
1,597,574	+		PFLU_RS07150	0.21	-2.1
1,597,574	+		PFLU_RS07150	0.21	+0.7
1,597,575	-		PFLU_RS07150	0.21	-0.9
1,597,575	-		PFLU_RS07150	0.21	-0.2
1,597,585	+		PFLU_RS07150	0.22	-0.6
1,597,585	+		PFLU_RS07150	0.22	-1.5
1,597,585	+		PFLU_RS07150	0.22	-0.1
1,597,585	+		PFLU_RS07150	0.22	+0.7
1,597,585	+		PFLU_RS07150	0.22	+0.3
1,597,586	-		PFLU_RS07150	0.22	-1.3
1,597,586	-		PFLU_RS07150	0.22	+0.1
1,597,586	-		PFLU_RS07150	0.22	-1.3
1,597,586	-		PFLU_RS07150	0.22	+0.5
1,597,607	+		PFLU_RS07150	0.24	+0.5
1,597,726	-		PFLU_RS07150	0.36	-1.3
1,597,732	-		PFLU_RS07150	0.37	+0.2