Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06865

Experiment: NAG (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C); with MOPS
1,536,207	+		PFLU_RS06855	0.64	-1.1
1,536,208	-		PFLU_RS06855	0.64	-2.6
1,536,299	+				+0.4
1,536,300	-				+0.0
1,536,302	+				+0.7
1,536,303	-				-0.4
1,536,303	-				-0.0
1,536,467	+				+0.6
1,536,467	+				-0.1
1,536,467	+				-0.1
1,536,468	-				-1.6
1,536,468	-				+0.9
1,536,468	-				+1.0
1,536,468	-				-1.0
1,536,468	-				+1.5
1,536,468	-				-0.2
1,536,486	+				-0.3
1,536,487	-				+1.0
1,536,487	-				+0.6
1,536,543	+		PFLU_RS06860	0.11	+1.8
1,536,543	+		PFLU_RS06860	0.11	-0.2
1,536,753	+		PFLU_RS06860	0.47	+1.0
1,536,753	+		PFLU_RS06860	0.47	+1.2
1,536,754	-		PFLU_RS06860	0.47	+0.6
1,536,754	-		PFLU_RS06860	0.47	+0.5
1,536,754	-		PFLU_RS06860	0.47	-0.5
1,536,792	+		PFLU_RS06860	0.53	-1.5
1,536,793	-		PFLU_RS06860	0.54	-0.9
1,536,793	-		PFLU_RS06860	0.54	+0.4
1,536,849	+		PFLU_RS06860	0.63	-0.2
1,536,849	+		PFLU_RS06860	0.63	+0.0
1,536,849	+		PFLU_RS06860	0.63	-1.1
1,536,849	+		PFLU_RS06860	0.63	+0.5
1,536,849	+		PFLU_RS06860	0.63	-2.9
1,536,849	+		PFLU_RS06860	0.63	+0.8
1,536,850	-		PFLU_RS06860	0.63	-0.9
1,536,850	-		PFLU_RS06860	0.63	-0.6
1,536,850	-		PFLU_RS06860	0.63	-0.6
1,536,981	+		PFLU_RS06860	0.86	-0.7
1,536,981	+		PFLU_RS06860	0.86	-0.9
1,536,982	-		PFLU_RS06860	0.86	-0.0
1,537,014	+				+1.7
1,537,014	+				+0.8
1,537,014	+				+0.6
1,537,015	-				-0.2
1,537,062	+				+1.2
1,537,062	+				-0.9
1,537,107	+				-1.0
1,537,107	+				-1.0
1,537,107	+				-1.9
1,537,107	+				-2.2
1,537,107	+				+2.0
1,537,107	+				+0.4
1,537,107	+				-0.3
1,537,107	+				+0.9
1,537,107	+				-0.6
1,537,107	+				-1.6
1,537,108	-				-0.6
1,537,108	-				+0.6
1,537,108	-				+0.2
1,537,108	-				+1.0
1,537,108	-				+0.6
1,537,108	-				+1.0
1,537,108	-				-0.7
1,537,108	-				-0.1
1,537,108	-				+1.0
1,537,108	-				+0.7
1,537,108	-				-1.0
1,537,108	-				-0.2
1,537,108	-				+0.2
1,537,108	-				+0.5
1,537,108	-				-1.4
1,537,108	-				-0.2
1,537,108	-				+0.4
1,537,108	-				+0.2
1,537,108	-				-0.5
1,537,108	-				-0.3
1,537,108	-				+0.4
1,537,175	-				+0.3
1,537,204	+				+1.4
1,537,204	+				+0.1
1,537,204	+				-0.2
1,537,205	-				+0.7
1,537,205	-				-0.8
1,537,205	-				+0.9
1,537,405	+		PFLU_RS06865	0.29	+0.6
1,537,405	+		PFLU_RS06865	0.29	+0.4
1,537,405	+		PFLU_RS06865	0.29	+0.5
1,537,425	-		PFLU_RS06865	0.31	-0.2
1,537,494	+		PFLU_RS06865	0.40	+0.6
1,537,494	+		PFLU_RS06865	0.40	-0.1
1,537,495	-		PFLU_RS06865	0.40	-0.5
1,537,495	-		PFLU_RS06865	0.40	+1.0
1,537,623	+		PFLU_RS06865	0.56	-1.1
1,537,623	+		PFLU_RS06865	0.56	+0.7
1,537,662	+		PFLU_RS06865	0.61	-0.6
1,537,663	-		PFLU_RS06865	0.61	-1.8
1,537,663	-		PFLU_RS06865	0.61	-0.1
1,537,663	-		PFLU_RS06865	0.61	-0.9
1,537,810	+		PFLU_RS06865	0.80	-0.4
1,537,950	-				+0.3
1,538,101	+		PFLU_RS06870	0.18	+0.4
1,538,101	+		PFLU_RS06870	0.18	-0.4
1,538,101	+		PFLU_RS06870	0.18	+0.3
1,538,101	+		PFLU_RS06870	0.18	-0.1
1,538,101	+		PFLU_RS06870	0.18	+1.1
1,538,101	+		PFLU_RS06870	0.18	-1.8
1,538,101	+		PFLU_RS06870	0.18	+1.0
1,538,102	-		PFLU_RS06870	0.18	+0.1
1,538,102	-		PFLU_RS06870	0.18	+1.6
1,538,102	-		PFLU_RS06870	0.18	+0.7
1,538,102	-		PFLU_RS06870	0.18	-0.7
1,538,102	-		PFLU_RS06870	0.18	+1.4
1,538,102	-		PFLU_RS06870	0.18	-0.4
1,538,102	-		PFLU_RS06870	0.18	-1.1
1,538,203	+		PFLU_RS06870	0.31	-0.3
1,538,203	+		PFLU_RS06870	0.31	+0.1
1,538,203	+		PFLU_RS06870	0.31	+0.5
1,538,203	+		PFLU_RS06870	0.31	-2.9
1,538,204	-		PFLU_RS06870	0.31	+0.7
1,538,204	-		PFLU_RS06870	0.31	+0.5
1,538,284	+		PFLU_RS06870	0.42	+0.1
1,538,284	+		PFLU_RS06870	0.42	-0.4
1,538,284	+		PFLU_RS06870	0.42	-0.8
1,538,284	+		PFLU_RS06870	0.42	+0.7
1,538,284	+		PFLU_RS06870	0.42	-0.6
1,538,285	-		PFLU_RS06870	0.42	-0.4
1,538,285	-		PFLU_RS06870	0.42	+0.7
1,538,285	-		PFLU_RS06870	0.42	-1.2
1,538,376	-		PFLU_RS06870	0.54	-1.1
1,538,376	-		PFLU_RS06870	0.54	+1.3
1,538,443	+		PFLU_RS06870	0.63	-0.1
1,538,443	+		PFLU_RS06870	0.63	-0.3
1,538,443	+		PFLU_RS06870	0.63	-2.0
1,538,443	+		PFLU_RS06870	0.63	-1.1
1,538,443	+		PFLU_RS06870	0.63	-0.4
1,538,443	+		PFLU_RS06870	0.63	+0.7
1,538,444	-		PFLU_RS06870	0.63	-0.7
1,538,444	-		PFLU_RS06870	0.63	+0.4
1,538,444	-		PFLU_RS06870	0.63	-1.0
1,538,444	-		PFLU_RS06870	0.63	-1.1
1,538,444	-		PFLU_RS06870	0.63	-1.0
1,538,551	+		PFLU_RS06870	0.77	+0.1
1,538,551	+		PFLU_RS06870	0.77	-1.8
1,538,551	+		PFLU_RS06870	0.77	-3.0
1,538,551	+		PFLU_RS06870	0.77	-0.9
1,538,551	+		PFLU_RS06870	0.77	-0.0
1,538,551	+		PFLU_RS06870	0.77	+3.6
1,538,551	+		PFLU_RS06870	0.77	+2.7
1,538,551	+		PFLU_RS06870	0.77	-0.7
1,538,551	+		PFLU_RS06870	0.77	+0.7
1,538,552	-		PFLU_RS06870	0.77	+1.7
1,538,552	-		PFLU_RS06870	0.77	-0.1
1,538,552	-		PFLU_RS06870	0.77	+0.4
1,538,552	-		PFLU_RS06870	0.77	+0.3
1,538,552	-		PFLU_RS06870	0.77	-1.0
1,538,552	-		PFLU_RS06870	0.77	+0.7
1,538,552	-		PFLU_RS06870	0.77	+1.0
1,538,552	-		PFLU_RS06870	0.77	-0.3
1,538,552	-		PFLU_RS06870	0.77	-0.3
1,538,552	-		PFLU_RS06870	0.77	+0.6
1,538,552	-		PFLU_RS06870	0.77	+0.3
1,538,785	+				+0.3
1,538,785	+				-1.0
1,538,785	+				-0.4
1,538,785	+				+0.1
1,538,785	+				+1.7
1,538,785	+				+0.2
1,538,785	+				+0.1
1,538,786	-				-0.1
1,538,786	-				+1.5
1,538,786	-				+0.7
1,538,786	-				+2.2
1,538,786	-				+0.5
1,538,786	-				+2.3
1,538,786	-				+0.6
1,538,786	-				+0.0
1,538,786	-				-1.4
1,538,789	+				+1.6
1,538,789	+				+0.1
1,538,789	+				-0.3
1,538,789	+				-1.7
1,538,789	+				-0.1
1,538,789	+				+0.1
1,538,789	+				-0.9
1,538,790	-				-1.4
1,538,790	-				+1.8
1,538,790	-				-1.1
1,538,790	-				+0.8
1,538,790	-				-0.3
1,538,790	-				+2.1
1,538,815	+				-0.1
1,538,816	-				-1.2
1,538,816	-				-0.1
1,538,816	-				+0.9
1,538,816	-				-0.9
1,538,871	+				+1.4