Experiment: NAG (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01765 and PFLU_RS01770 overlap by 4 nucleotides PFLU_RS01770 and PFLU_RS01775 are separated by 376 nucleotides PFLU_RS01775 and PFLU_RS01780 are separated by 78 nucleotides
PFLU_RS01765: PFLU_RS01765 - histidine utilization repressor, at 396,119 to 396,868
_RS01765
PFLU_RS01770: PFLU_RS01770 - HutD family protein, at 396,865 to 397,425
_RS01770
PFLU_RS01775: PFLU_RS01775 - urocanate hydratase, at 397,802 to 399,502
_RS01775
PFLU_RS01780: PFLU_RS01780 - cytosine permease, at 399,581 to 401,026
_RS01780
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 396.841 kb on + strand at 396.841 kb on + strand at 396.841 kb on + strand at 396.841 kb on + strand at 396.841 kb on + strand at 396.841 kb on + strand at 396.842 kb on - strand at 396.842 kb on - strand at 396.842 kb on - strand at 396.842 kb on - strand at 396.842 kb on - strand at 396.842 kb on - strand at 396.863 kb on - strand at 396.875 kb on + strand at 396.875 kb on + strand at 396.875 kb on + strand at 396.876 kb on - strand at 396.899 kb on - strand at 396.899 kb on - strand at 397.201 kb on + strand, within PFLU_RS01770 at 397.201 kb on + strand, within PFLU_RS01770 at 397.201 kb on + strand, within PFLU_RS01770 at 397.202 kb on - strand, within PFLU_RS01770 at 397.202 kb on - strand, within PFLU_RS01770 at 397.202 kb on - strand, within PFLU_RS01770 at 397.202 kb on - strand, within PFLU_RS01770 at 397.216 kb on + strand, within PFLU_RS01770 at 397.374 kb on + strand at 397.375 kb on - strand at 397.375 kb on - strand at 397.471 kb on + strand at 397.471 kb on + strand at 397.471 kb on + strand at 397.471 kb on + strand at 397.472 kb on - strand at 397.472 kb on - strand at 397.472 kb on - strand at 397.472 kb on - strand at 397.472 kb on - strand at 397.472 kb on - strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.477 kb on + strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.478 kb on - strand at 397.536 kb on + strand at 397.536 kb on + strand at 397.536 kb on + strand at 397.536 kb on + strand at 397.536 kb on + strand at 397.537 kb on - strand at 397.540 kb on + strand at 397.540 kb on + strand at 397.541 kb on - strand at 397.541 kb on - strand at 397.541 kb on - strand at 397.541 kb on - strand at 397.629 kb on - strand at 397.642 kb on - strand at 397.744 kb on - strand at 397.744 kb on - strand at 397.751 kb on + strand at 397.752 kb on - strand at 397.752 kb on - strand at 397.755 kb on + strand at 397.756 kb on - strand at 397.756 kb on - strand at 397.762 kb on - strand at 397.775 kb on + strand at 397.775 kb on + strand at 397.776 kb on - strand at 397.827 kb on + strand at 397.827 kb on + strand at 397.827 kb on + strand at 397.827 kb on + strand at 397.827 kb on + strand at 397.828 kb on - strand at 397.828 kb on - strand at 397.843 kb on + strand at 397.843 kb on + strand at 397.844 kb on - strand at 397.850 kb on + strand at 397.882 kb on + strand at 397.986 kb on - strand, within PFLU_RS01775 at 398.011 kb on + strand, within PFLU_RS01775 at 398.011 kb on + strand, within PFLU_RS01775 at 398.011 kb on + strand, within PFLU_RS01775 at 398.012 kb on - strand, within PFLU_RS01775 at 398.012 kb on - strand, within PFLU_RS01775 at 398.012 kb on - strand, within PFLU_RS01775 at 398.012 kb on - strand, within PFLU_RS01775 at 398.012 kb on - strand, within PFLU_RS01775 at 398.012 kb on - strand, within PFLU_RS01775 at 398.025 kb on - strand, within PFLU_RS01775 at 398.025 kb on - strand, within PFLU_RS01775 at 398.025 kb on - strand, within PFLU_RS01775 at 398.090 kb on - strand, within PFLU_RS01775 at 398.133 kb on + strand, within PFLU_RS01775 at 398.133 kb on + strand, within PFLU_RS01775 at 398.134 kb on - strand, within PFLU_RS01775 at 398.134 kb on - strand, within PFLU_RS01775 at 398.216 kb on + strand, within PFLU_RS01775 at 398.216 kb on + strand, within PFLU_RS01775 at 398.216 kb on + strand, within PFLU_RS01775 at 398.216 kb on + strand, within PFLU_RS01775 at 398.216 kb on + strand, within PFLU_RS01775 at 398.216 kb on + strand, within PFLU_RS01775 at 398.217 kb on - strand, within PFLU_RS01775 at 398.217 kb on - strand, within PFLU_RS01775 at 398.217 kb on - strand, within PFLU_RS01775 at 398.217 kb on - strand, within PFLU_RS01775 at 398.217 kb on - strand, within PFLU_RS01775 at 398.246 kb on + strand, within PFLU_RS01775 at 398.246 kb on + strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.247 kb on - strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.279 kb on + strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.280 kb on - strand, within PFLU_RS01775 at 398.312 kb on + strand, within PFLU_RS01775 at 398.312 kb on + strand, within PFLU_RS01775 at 398.313 kb on - strand, within PFLU_RS01775 at 398.516 kb on + strand, within PFLU_RS01775 at 398.516 kb on + strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.517 kb on - strand, within PFLU_RS01775 at 398.536 kb on + strand, within PFLU_RS01775 at 398.536 kb on + strand, within PFLU_RS01775 at 398.537 kb on - strand, within PFLU_RS01775 at 398.537 kb on - strand, within PFLU_RS01775 at 398.537 kb on - strand, within PFLU_RS01775 at 398.537 kb on - strand, within PFLU_RS01775 at 398.651 kb on + strand, within PFLU_RS01775 at 398.651 kb on + strand, within PFLU_RS01775 at 398.652 kb on - strand, within PFLU_RS01775 at 398.798 kb on + strand, within PFLU_RS01775 at 398.876 kb on + strand, within PFLU_RS01775 at 398.876 kb on + strand, within PFLU_RS01775 at 398.876 kb on + strand, within PFLU_RS01775 at 398.876 kb on + strand, within PFLU_RS01775 at 398.876 kb on + strand, within PFLU_RS01775 at 398.877 kb on - strand, within PFLU_RS01775 at 398.877 kb on - strand, within PFLU_RS01775 at 398.951 kb on + strand, within PFLU_RS01775 at 398.951 kb on + strand, within PFLU_RS01775 at 398.951 kb on + strand, within PFLU_RS01775 at 398.951 kb on + strand, within PFLU_RS01775 at 398.951 kb on + strand, within PFLU_RS01775 at 398.951 kb on + strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 398.952 kb on - strand, within PFLU_RS01775 at 399.058 kb on + strand, within PFLU_RS01775 at 399.058 kb on + strand, within PFLU_RS01775 at 399.058 kb on + strand, within PFLU_RS01775 at 399.058 kb on + strand, within PFLU_RS01775 at 399.208 kb on + strand, within PFLU_RS01775 at 399.208 kb on + strand, within PFLU_RS01775 at 399.208 kb on + strand, within PFLU_RS01775 at 399.208 kb on + strand, within PFLU_RS01775 at 399.209 kb on - strand, within PFLU_RS01775 at 399.501 kb on - strand at 399.629 kb on + strand at 399.629 kb on + strand at 399.629 kb on + strand at 399.629 kb on + strand at 399.629 kb on + strand at 399.629 kb on + strand at 399.630 kb on - strand at 399.630 kb on - strand at 399.678 kb on + strand at 399.679 kb on - strand at 399.679 kb on - strand at 399.679 kb on - strand at 399.917 kb on + strand, within PFLU_RS01780 at 399.917 kb on + strand, within PFLU_RS01780 at 399.917 kb on + strand, within PFLU_RS01780 at 399.918 kb on - strand, within PFLU_RS01780 at 399.918 kb on - strand, within PFLU_RS01780 at 400.229 kb on + strand, within PFLU_RS01780 at 400.229 kb on + strand, within PFLU_RS01780 at 400.229 kb on + strand, within PFLU_RS01780 at 400.229 kb on + strand, within PFLU_RS01780 at 400.229 kb on + strand, within PFLU_RS01780 at 400.230 kb on - strand, within PFLU_RS01780 at 400.241 kb on + strand, within PFLU_RS01780 at 400.241 kb on + strand, within PFLU_RS01780 at 400.241 kb on + strand, within PFLU_RS01780 at 400.242 kb on - strand, within PFLU_RS01780 at 400.242 kb on - strand, within PFLU_RS01780 at 400.250 kb on + strand, within PFLU_RS01780 at 400.392 kb on - strand, within PFLU_RS01780 at 400.392 kb on - strand, within PFLU_RS01780 at 400.436 kb on + strand, within PFLU_RS01780 at 400.471 kb on + strand, within PFLU_RS01780 at 400.471 kb on + strand, within PFLU_RS01780 at 400.472 kb on - strand, within PFLU_RS01780 at 400.485 kb on - strand, within PFLU_RS01780
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C); with MOPS remove 396,841 + -1.2 396,841 + -0.4 396,841 + +0.7 396,841 + -1.0 396,841 + -1.1 396,841 + +0.7 396,842 - +0.1 396,842 - -0.8 396,842 - -0.9 396,842 - -0.7 396,842 - +0.7 396,842 - -1.4 396,863 - +1.1 396,875 + +0.3 396,875 + +1.2 396,875 + -2.2 396,876 - +0.0 396,899 - +1.9 396,899 - -1.5 397,201 + PFLU_RS01770 0.60 +0.1 397,201 + PFLU_RS01770 0.60 +1.0 397,201 + PFLU_RS01770 0.60 -0.3 397,202 - PFLU_RS01770 0.60 -0.4 397,202 - PFLU_RS01770 0.60 +0.3 397,202 - PFLU_RS01770 0.60 -0.4 397,202 - PFLU_RS01770 0.60 -1.0 397,216 + PFLU_RS01770 0.63 -0.4 397,374 + +0.4 397,375 - -0.7 397,375 - -0.7 397,471 + +1.2 397,471 + -1.0 397,471 + +1.0 397,471 + -2.4 397,472 - +1.5 397,472 - +1.6 397,472 - +0.0 397,472 - +0.1 397,472 - -1.2 397,472 - +1.0 397,477 + -0.0 397,477 + +1.3 397,477 + -0.0 397,477 + -0.6 397,477 + +1.3 397,477 + +0.2 397,477 + +0.3 397,477 + -0.8 397,477 + +0.1 397,477 + -2.7 397,477 + -1.9 397,478 - +0.0 397,478 - +0.3 397,478 - -1.3 397,478 - -0.6 397,478 - -0.3 397,478 - +1.3 397,478 - -0.4 397,478 - +0.7 397,478 - +0.3 397,478 - +1.4 397,478 - +0.4 397,478 - +1.8 397,478 - +0.1 397,478 - -0.1 397,478 - -2.6 397,478 - +1.4 397,536 + +1.0 397,536 + +1.6 397,536 + -0.0 397,536 + -0.3 397,536 + -0.2 397,537 - -0.4 397,540 + +2.3 397,540 + +2.0 397,541 - -3.4 397,541 - +0.1 397,541 - +0.5 397,541 - +0.6 397,629 - -0.2 397,642 - -1.0 397,744 - -0.9 397,744 - +0.6 397,751 + +0.9 397,752 - +0.3 397,752 - +1.0 397,755 + +0.6 397,756 - -0.3 397,756 - -0.6 397,762 - +0.5 397,775 + +0.1 397,775 + +0.2 397,776 - +0.1 397,827 + +0.6 397,827 + -1.0 397,827 + +0.3 397,827 + +0.8 397,827 + +0.3 397,828 - -0.2 397,828 - -0.5 397,843 + -1.5 397,843 + -2.0 397,844 - -0.5 397,850 + +0.6 397,882 + +0.0 397,986 - PFLU_RS01775 0.11 +0.8 398,011 + PFLU_RS01775 0.12 +0.1 398,011 + PFLU_RS01775 0.12 +1.3 398,011 + PFLU_RS01775 0.12 +1.7 398,012 - PFLU_RS01775 0.12 -0.0 398,012 - PFLU_RS01775 0.12 +0.5 398,012 - PFLU_RS01775 0.12 +1.3 398,012 - PFLU_RS01775 0.12 +1.9 398,012 - PFLU_RS01775 0.12 -2.5 398,012 - PFLU_RS01775 0.12 +0.2 398,025 - PFLU_RS01775 0.13 -0.7 398,025 - PFLU_RS01775 0.13 +0.4 398,025 - PFLU_RS01775 0.13 +0.9 398,090 - PFLU_RS01775 0.17 +1.2 398,133 + PFLU_RS01775 0.19 +0.0 398,133 + PFLU_RS01775 0.19 -0.6 398,134 - PFLU_RS01775 0.20 +1.1 398,134 - PFLU_RS01775 0.20 +1.3 398,216 + PFLU_RS01775 0.24 -0.4 398,216 + PFLU_RS01775 0.24 +0.7 398,216 + PFLU_RS01775 0.24 -1.0 398,216 + PFLU_RS01775 0.24 +0.4 398,216 + PFLU_RS01775 0.24 +0.9 398,216 + PFLU_RS01775 0.24 +0.3 398,217 - PFLU_RS01775 0.24 +0.2 398,217 - PFLU_RS01775 0.24 -0.6 398,217 - PFLU_RS01775 0.24 -0.2 398,217 - PFLU_RS01775 0.24 -2.6 398,217 - PFLU_RS01775 0.24 -0.0 398,246 + PFLU_RS01775 0.26 -1.6 398,246 + PFLU_RS01775 0.26 +0.1 398,247 - PFLU_RS01775 0.26 -0.5 398,247 - PFLU_RS01775 0.26 +0.2 398,247 - PFLU_RS01775 0.26 +1.0 398,247 - PFLU_RS01775 0.26 +0.3 398,247 - PFLU_RS01775 0.26 +1.3 398,247 - PFLU_RS01775 0.26 +1.4 398,247 - PFLU_RS01775 0.26 +0.5 398,279 + PFLU_RS01775 0.28 -0.4 398,279 + PFLU_RS01775 0.28 +0.8 398,279 + PFLU_RS01775 0.28 +0.6 398,279 + PFLU_RS01775 0.28 +1.2 398,279 + PFLU_RS01775 0.28 +2.0 398,279 + PFLU_RS01775 0.28 -0.7 398,279 + PFLU_RS01775 0.28 +0.9 398,279 + PFLU_RS01775 0.28 +0.4 398,280 - PFLU_RS01775 0.28 -0.9 398,280 - PFLU_RS01775 0.28 +0.6 398,280 - PFLU_RS01775 0.28 +0.1 398,280 - PFLU_RS01775 0.28 +0.8 398,280 - PFLU_RS01775 0.28 -0.2 398,280 - PFLU_RS01775 0.28 +0.8 398,280 - PFLU_RS01775 0.28 -0.3 398,280 - PFLU_RS01775 0.28 +0.4 398,280 - PFLU_RS01775 0.28 -0.8 398,280 - PFLU_RS01775 0.28 +0.4 398,280 - PFLU_RS01775 0.28 +0.4 398,312 + PFLU_RS01775 0.30 +0.8 398,312 + PFLU_RS01775 0.30 +0.0 398,313 - PFLU_RS01775 0.30 -1.4 398,516 + PFLU_RS01775 0.42 +0.0 398,516 + PFLU_RS01775 0.42 -0.6 398,517 - PFLU_RS01775 0.42 +0.3 398,517 - PFLU_RS01775 0.42 -2.0 398,517 - PFLU_RS01775 0.42 +1.7 398,517 - PFLU_RS01775 0.42 +0.7 398,517 - PFLU_RS01775 0.42 -2.0 398,517 - PFLU_RS01775 0.42 -1.4 398,517 - PFLU_RS01775 0.42 +0.1 398,517 - PFLU_RS01775 0.42 -1.9 398,536 + PFLU_RS01775 0.43 +2.4 398,536 + PFLU_RS01775 0.43 -0.6 398,537 - PFLU_RS01775 0.43 -0.1 398,537 - PFLU_RS01775 0.43 +1.0 398,537 - PFLU_RS01775 0.43 +1.7 398,537 - PFLU_RS01775 0.43 -1.5 398,651 + PFLU_RS01775 0.50 +0.1 398,651 + PFLU_RS01775 0.50 -0.6 398,652 - PFLU_RS01775 0.50 +1.0 398,798 + PFLU_RS01775 0.59 +0.2 398,876 + PFLU_RS01775 0.63 -0.1 398,876 + PFLU_RS01775 0.63 -0.8 398,876 + PFLU_RS01775 0.63 +1.4 398,876 + PFLU_RS01775 0.63 +1.0 398,876 + PFLU_RS01775 0.63 -0.9 398,877 - PFLU_RS01775 0.63 -0.3 398,877 - PFLU_RS01775 0.63 -0.7 398,951 + PFLU_RS01775 0.68 -1.4 398,951 + PFLU_RS01775 0.68 +0.9 398,951 + PFLU_RS01775 0.68 -2.3 398,951 + PFLU_RS01775 0.68 -2.7 398,951 + PFLU_RS01775 0.68 +0.8 398,951 + PFLU_RS01775 0.68 -1.0 398,952 - PFLU_RS01775 0.68 -1.0 398,952 - PFLU_RS01775 0.68 -1.1 398,952 - PFLU_RS01775 0.68 +3.8 398,952 - PFLU_RS01775 0.68 -1.4 398,952 - PFLU_RS01775 0.68 -0.5 398,952 - PFLU_RS01775 0.68 +0.4 398,952 - PFLU_RS01775 0.68 -2.3 398,952 - PFLU_RS01775 0.68 -1.0 398,952 - PFLU_RS01775 0.68 -0.3 399,058 + PFLU_RS01775 0.74 -0.6 399,058 + PFLU_RS01775 0.74 +0.3 399,058 + PFLU_RS01775 0.74 +0.0 399,058 + PFLU_RS01775 0.74 -0.3 399,208 + PFLU_RS01775 0.83 -2.2 399,208 + PFLU_RS01775 0.83 -0.2 399,208 + PFLU_RS01775 0.83 +0.8 399,208 + PFLU_RS01775 0.83 -0.6 399,209 - PFLU_RS01775 0.83 +1.5 399,501 - +0.6 399,629 + -0.2 399,629 + +1.7 399,629 + -2.3 399,629 + -0.7 399,629 + +1.3 399,629 + -0.9 399,630 - +0.7 399,630 - +0.8 399,678 + -0.3 399,679 - +1.3 399,679 - +0.4 399,679 - -0.6 399,917 + PFLU_RS01780 0.23 +0.7 399,917 + PFLU_RS01780 0.23 +0.4 399,917 + PFLU_RS01780 0.23 +0.4 399,918 - PFLU_RS01780 0.23 +1.6 399,918 - PFLU_RS01780 0.23 -1.4 400,229 + PFLU_RS01780 0.45 +1.3 400,229 + PFLU_RS01780 0.45 +0.8 400,229 + PFLU_RS01780 0.45 +0.3 400,229 + PFLU_RS01780 0.45 -0.7 400,229 + PFLU_RS01780 0.45 -2.3 400,230 - PFLU_RS01780 0.45 +1.1 400,241 + PFLU_RS01780 0.46 +1.4 400,241 + PFLU_RS01780 0.46 +0.4 400,241 + PFLU_RS01780 0.46 +0.4 400,242 - PFLU_RS01780 0.46 +0.1 400,242 - PFLU_RS01780 0.46 +0.4 400,250 + PFLU_RS01780 0.46 +0.3 400,392 - PFLU_RS01780 0.56 -0.5 400,392 - PFLU_RS01780 0.56 +0.2 400,436 + PFLU_RS01780 0.59 +0.2 400,471 + PFLU_RS01780 0.62 +1.5 400,471 + PFLU_RS01780 0.62 -1.1 400,472 - PFLU_RS01780 0.62 +3.1 400,485 - PFLU_RS01780 0.63 -0.3
Or see this region's nucleotide sequence