Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26285 and PS417_26290 are separated by 14 nucleotides PS417_26290 and PS417_26295 are separated by 27 nucleotides PS417_26295 and PS417_26300 are separated by 360 nucleotides PS417_26300 and PS417_26305 are separated by 106 nucleotides
PS417_26285: PS417_26285 - 3-hydroxybutyryl-CoA dehydrogenase, at 5,680,448 to 5,681,413
_26285
PS417_26290: PS417_26290 - 4-hydroxybenzoyl-CoA thioesterase, at 5,681,428 to 5,681,904
_26290
PS417_26295: PS417_26295 - gamma-butyrobetaine dioxygenase, at 5,681,932 to 5,683,092
_26295
PS417_26300: PS417_26300 - hypothetical protein, at 5,683,453 to 5,683,716
_26300
PS417_26305: PS417_26305 - AraC family transcriptional regulator, at 5,683,823 to 5,684,926
_26305
Position (kb) 5681
5682
5683
5684 Strain fitness (log2 ratio) -1
0
1 at 5680.962 kb on - strand, within PS417_26285 at 5681.156 kb on + strand, within PS417_26285 at 5681.156 kb on + strand, within PS417_26285 at 5681.157 kb on - strand, within PS417_26285 at 5681.157 kb on - strand, within PS417_26285 at 5681.234 kb on + strand, within PS417_26285 at 5681.235 kb on - strand, within PS417_26285 at 5681.235 kb on - strand, within PS417_26285 at 5681.446 kb on + strand at 5681.446 kb on + strand at 5681.446 kb on + strand at 5681.446 kb on + strand at 5681.480 kb on - strand, within PS417_26290 at 5681.621 kb on - strand, within PS417_26290 at 5681.621 kb on - strand, within PS417_26290 at 5681.621 kb on - strand, within PS417_26290 at 5681.662 kb on - strand, within PS417_26290 at 5681.915 kb on + strand at 5681.922 kb on - strand at 5681.965 kb on - strand at 5681.965 kb on - strand at 5681.996 kb on + strand at 5682.098 kb on + strand at 5682.098 kb on + strand, within PS417_26295 at 5682.098 kb on + strand, within PS417_26295 at 5682.100 kb on + strand, within PS417_26295 at 5682.101 kb on - strand, within PS417_26295 at 5682.101 kb on - strand, within PS417_26295 at 5683.042 kb on + strand at 5683.261 kb on + strand at 5683.262 kb on - strand at 5683.318 kb on - strand at 5683.320 kb on + strand at 5683.321 kb on - strand at 5683.329 kb on + strand at 5683.330 kb on - strand at 5683.618 kb on + strand, within PS417_26300 at 5683.618 kb on + strand, within PS417_26300 at 5683.618 kb on + strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.619 kb on - strand, within PS417_26300 at 5683.717 kb on + strand at 5683.825 kb on - strand at 5683.833 kb on - strand at 5683.902 kb on - strand at 5683.955 kb on + strand, within PS417_26305 at 5683.986 kb on + strand, within PS417_26305
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 5,680,962 - PS417_26285 0.53 +0.0 5,681,156 + PS417_26285 0.73 +0.7 5,681,156 + PS417_26285 0.73 -0.9 5,681,157 - PS417_26285 0.73 -0.3 5,681,157 - PS417_26285 0.73 +0.5 5,681,234 + PS417_26285 0.81 +0.2 5,681,235 - PS417_26285 0.81 +0.2 5,681,235 - PS417_26285 0.81 -0.7 5,681,446 + +0.4 5,681,446 + -0.2 5,681,446 + +0.1 5,681,446 + -0.2 5,681,480 - PS417_26290 0.11 -0.1 5,681,621 - PS417_26290 0.40 +0.1 5,681,621 - PS417_26290 0.40 +0.2 5,681,621 - PS417_26290 0.40 -0.9 5,681,662 - PS417_26290 0.49 -0.5 5,681,915 + +0.2 5,681,922 - +0.5 5,681,965 - -0.2 5,681,965 - +0.1 5,681,996 + -1.0 5,682,098 + +1.5 5,682,098 + PS417_26295 0.14 -0.4 5,682,098 + PS417_26295 0.14 -1.3 5,682,100 + PS417_26295 0.14 -1.3 5,682,101 - PS417_26295 0.15 +0.2 5,682,101 - PS417_26295 0.15 -1.5 5,683,042 + -0.1 5,683,261 + +0.3 5,683,262 - -1.4 5,683,318 - -0.6 5,683,320 + +0.9 5,683,321 - +0.7 5,683,329 + -0.4 5,683,330 - +0.2 5,683,618 + PS417_26300 0.62 +0.8 5,683,618 + PS417_26300 0.62 -1.7 5,683,618 + PS417_26300 0.62 -0.1 5,683,619 - PS417_26300 0.63 +0.3 5,683,619 - PS417_26300 0.63 +0.1 5,683,619 - PS417_26300 0.63 +0.0 5,683,619 - PS417_26300 0.63 +0.0 5,683,717 + +0.2 5,683,825 - -0.8 5,683,833 - +0.1 5,683,902 - -0.1 5,683,955 + PS417_26305 0.12 -0.4 5,683,986 + PS417_26305 0.15 -0.2
Or see this region's nucleotide sequence