Strain Fitness in Pseudomonas simiae WCS417 around PS417_22885

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22880 and PS417_22885 are separated by 67 nucleotidesPS417_22885 and PS417_22890 are separated by 129 nucleotides PS417_22880: PS417_22880 - threonine synthase, at 4,958,370 to 4,959,779 _22880 PS417_22885: PS417_22885 - homoserine dehydrogenase, at 4,959,847 to 4,961,151 _22885 PS417_22890: PS417_22890 - protein-disulfide isomerase, at 4,961,281 to 4,962,012 _22890 Position (kb) 4959 4960 4961 4962Strain fitness (log2 ratio) -2 -1 0 1at 4959.793 kb on - strandat 4959.849 kb on - strandat 4960.399 kb on - strand, within PS417_22885

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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4,959,793 - +0.3
4,959,849 - -0.1
4,960,399 - PS417_22885 0.42 -2.0

Or see this region's nucleotide sequence