Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22675 and PS417_22680 overlap by 11 nucleotides PS417_22680 and PS417_22685 are separated by 136 nucleotides
PS417_22675: PS417_22675 - histidine kinase, at 4,909,999 to 4,911,468
_22675
PS417_22680: PS417_22680 - chemotaxis protein CheY, at 4,911,458 to 4,912,192
_22680
PS417_22685: PS417_22685 - Glucokinase (EC 2.7.1.2) <small>(from data)</small>, at 4,912,329 to 4,913,285
_22685
Position (kb) 4911
4912
4913 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4910.901 kb on - strand, within PS417_22675 at 4911.027 kb on + strand, within PS417_22675 at 4911.063 kb on + strand, within PS417_22675 at 4911.063 kb on + strand, within PS417_22675 at 4911.063 kb on + strand, within PS417_22675 at 4911.063 kb on + strand, within PS417_22675 at 4911.064 kb on - strand, within PS417_22675 at 4911.064 kb on - strand, within PS417_22675 at 4911.064 kb on - strand, within PS417_22675 at 4911.751 kb on + strand, within PS417_22680 at 4911.879 kb on + strand, within PS417_22680 at 4911.879 kb on + strand, within PS417_22680 at 4911.880 kb on - strand, within PS417_22680 at 4911.880 kb on - strand, within PS417_22680 at 4911.880 kb on - strand, within PS417_22680 at 4912.122 kb on + strand at 4912.123 kb on - strand at 4912.123 kb on - strand at 4912.123 kb on - strand at 4912.123 kb on - strand at 4912.178 kb on - strand at 4912.222 kb on + strand at 4912.222 kb on + strand at 4912.222 kb on + strand at 4912.223 kb on - strand at 4912.223 kb on - strand at 4912.223 kb on - strand at 4912.320 kb on + strand at 4912.320 kb on + strand at 4912.331 kb on - strand at 4912.331 kb on - strand at 4912.417 kb on + strand at 4912.470 kb on - strand, within PS417_22685 at 4912.510 kb on + strand, within PS417_22685 at 4912.510 kb on + strand, within PS417_22685 at 4912.510 kb on + strand, within PS417_22685 at 4912.510 kb on + strand, within PS417_22685 at 4912.511 kb on - strand, within PS417_22685 at 4912.511 kb on - strand, within PS417_22685 at 4912.588 kb on - strand, within PS417_22685 at 4912.588 kb on - strand, within PS417_22685 at 4912.688 kb on - strand, within PS417_22685 at 4912.748 kb on + strand, within PS417_22685 at 4912.750 kb on + strand, within PS417_22685 at 4912.750 kb on + strand, within PS417_22685 at 4912.750 kb on + strand, within PS417_22685 at 4912.751 kb on - strand, within PS417_22685 at 4913.152 kb on + strand, within PS417_22685 at 4913.153 kb on - strand, within PS417_22685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,910,901 - PS417_22675 0.61 +1.7 4,911,027 + PS417_22675 0.70 +3.1 4,911,063 + PS417_22675 0.72 +2.6 4,911,063 + PS417_22675 0.72 +3.3 4,911,063 + PS417_22675 0.72 +2.4 4,911,063 + PS417_22675 0.72 +4.0 4,911,064 - PS417_22675 0.72 +1.8 4,911,064 - PS417_22675 0.72 +2.3 4,911,064 - PS417_22675 0.72 +2.3 4,911,751 + PS417_22680 0.40 +7.3 4,911,879 + PS417_22680 0.57 +7.8 4,911,879 + PS417_22680 0.57 +7.8 4,911,880 - PS417_22680 0.57 +7.7 4,911,880 - PS417_22680 0.57 +7.6 4,911,880 - PS417_22680 0.57 +7.4 4,912,122 + +8.1 4,912,123 - +7.4 4,912,123 - +7.1 4,912,123 - +7.1 4,912,123 - +7.5 4,912,178 - +6.0 4,912,222 + +7.8 4,912,222 + +7.7 4,912,222 + +7.3 4,912,223 - -0.7 4,912,223 - -0.2 4,912,223 - -0.5 4,912,320 + +6.8 4,912,320 + +7.0 4,912,331 - -1.2 4,912,331 - -0.4 4,912,417 + +4.6 4,912,470 - PS417_22685 0.15 -5.0 4,912,510 + PS417_22685 0.19 +4.6 4,912,510 + PS417_22685 0.19 +6.1 4,912,510 + PS417_22685 0.19 +6.2 4,912,510 + PS417_22685 0.19 +7.9 4,912,511 - PS417_22685 0.19 -4.2 4,912,511 - PS417_22685 0.19 -6.1 4,912,588 - PS417_22685 0.27 -1.2 4,912,588 - PS417_22685 0.27 -4.3 4,912,688 - PS417_22685 0.38 -2.4 4,912,748 + PS417_22685 0.44 +5.0 4,912,750 + PS417_22685 0.44 -0.1 4,912,750 + PS417_22685 0.44 -0.5 4,912,750 + PS417_22685 0.44 +0.0 4,912,751 - PS417_22685 0.44 -3.6 4,913,152 + PS417_22685 0.86 +5.4 4,913,153 - PS417_22685 0.86 -2.0
Or see this region's nucleotide sequence