Experiment: D-Glucosamine Hydrochloride (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18815 and PS417_18820 are separated by 130 nucleotides PS417_18820 and PS417_18825 overlap by 23 nucleotides PS417_18825 and PS417_18830 are separated by 135 nucleotides PS417_18830 and PS417_18835 are separated by 38 nucleotides
PS417_18815: PS417_18815 - glutathione S-transferase, at 4,078,029 to 4,078,655
_18815
PS417_18820: PS417_18820 - methylmalonyl-CoA epimerase, at 4,078,786 to 4,079,241
_18820
PS417_18825: PS417_18825 - TetR family transcriptional regulator, at 4,079,219 to 4,079,845
_18825
PS417_18830: PS417_18830 - phenylacetic acid degradation protein, at 4,079,981 to 4,080,421
_18830
PS417_18835: PS417_18835 - peptide transporter, at 4,080,460 to 4,082,196
_18835
Position (kb) 4079
4080 Strain fitness (log2 ratio) -2
-1
0
1 at 4078.249 kb on + strand, within PS417_18815 at 4078.249 kb on + strand, within PS417_18815 at 4078.250 kb on - strand, within PS417_18815 at 4078.250 kb on - strand, within PS417_18815 at 4078.315 kb on + strand, within PS417_18815 at 4078.316 kb on - strand, within PS417_18815 at 4078.375 kb on + strand, within PS417_18815 at 4078.384 kb on + strand, within PS417_18815 at 4078.698 kb on - strand at 4078.698 kb on - strand at 4078.815 kb on - strand at 4078.815 kb on - strand at 4078.846 kb on + strand, within PS417_18820 at 4078.846 kb on + strand, within PS417_18820 at 4078.846 kb on + strand, within PS417_18820 at 4078.847 kb on - strand, within PS417_18820 at 4078.847 kb on - strand, within PS417_18820 at 4078.849 kb on + strand, within PS417_18820 at 4078.919 kb on - strand, within PS417_18820 at 4079.029 kb on + strand, within PS417_18820 at 4079.029 kb on + strand, within PS417_18820 at 4079.030 kb on - strand, within PS417_18820 at 4079.030 kb on - strand, within PS417_18820 at 4079.056 kb on + strand, within PS417_18820 at 4079.057 kb on - strand, within PS417_18820 at 4079.151 kb on + strand, within PS417_18820 at 4079.277 kb on + strand at 4079.326 kb on - strand, within PS417_18825 at 4079.544 kb on + strand, within PS417_18825 at 4079.544 kb on + strand, within PS417_18825 at 4079.545 kb on - strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.682 kb on + strand, within PS417_18825 at 4079.683 kb on - strand, within PS417_18825 at 4079.683 kb on - strand, within PS417_18825 at 4079.880 kb on - strand at 4080.012 kb on + strand at 4080.012 kb on + strand at 4080.013 kb on - strand at 4080.263 kb on + strand, within PS417_18830 at 4080.264 kb on - strand, within PS417_18830
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C) remove 4,078,249 + PS417_18815 0.35 +0.1 4,078,249 + PS417_18815 0.35 -0.3 4,078,250 - PS417_18815 0.35 +0.1 4,078,250 - PS417_18815 0.35 +0.5 4,078,315 + PS417_18815 0.46 +0.3 4,078,316 - PS417_18815 0.46 -0.8 4,078,375 + PS417_18815 0.55 +0.7 4,078,384 + PS417_18815 0.57 -0.1 4,078,698 - +0.0 4,078,698 - -1.6 4,078,815 - -0.4 4,078,815 - -0.0 4,078,846 + PS417_18820 0.13 +0.9 4,078,846 + PS417_18820 0.13 -0.4 4,078,846 + PS417_18820 0.13 +0.3 4,078,847 - PS417_18820 0.13 -0.4 4,078,847 - PS417_18820 0.13 +0.2 4,078,849 + PS417_18820 0.14 -0.1 4,078,919 - PS417_18820 0.29 +0.6 4,079,029 + PS417_18820 0.53 +0.8 4,079,029 + PS417_18820 0.53 +0.7 4,079,030 - PS417_18820 0.54 +0.0 4,079,030 - PS417_18820 0.54 +0.3 4,079,056 + PS417_18820 0.59 -0.2 4,079,057 - PS417_18820 0.59 +0.6 4,079,151 + PS417_18820 0.80 +0.2 4,079,277 + +0.8 4,079,326 - PS417_18825 0.17 -0.8 4,079,544 + PS417_18825 0.52 -0.5 4,079,544 + PS417_18825 0.52 -1.2 4,079,545 - PS417_18825 0.52 -0.5 4,079,682 + PS417_18825 0.74 -2.3 4,079,682 + PS417_18825 0.74 -1.0 4,079,682 + -0.8 4,079,682 + PS417_18825 0.74 -1.1 4,079,682 + PS417_18825 0.74 -1.4 4,079,682 + PS417_18825 0.74 -0.0 4,079,683 - PS417_18825 0.74 -0.1 4,079,683 - PS417_18825 0.74 -1.4 4,079,880 - -0.4 4,080,012 + -0.4 4,080,012 + -0.1 4,080,013 - -0.2 4,080,263 + PS417_18830 0.64 +0.7 4,080,264 - PS417_18830 0.64 -0.8
Or see this region's nucleotide sequence