Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03758 and ECD_03759 are separated by 101 nucleotides ECD_03759 and ECD_03760 are separated by 90 nucleotides ECD_03760 and ECD_03761 are separated by 66 nucleotides
ECD_03758: ECD_03758 - putative sugar phosphate isomerase, at 3,967,863 to 3,968,843
_03758
ECD_03759: ECD_03759 - MFS transporter family protein, at 3,968,945 to 3,970,210
_03759
ECD_03760: ECD_03760 - outer membrane porin L; putative sulfolipid porin, at 3,970,301 to 3,970,993
_03760
ECD_03761: ECD_03761 - putative sulfoquinovose importer, at 3,971,060 to 3,972,463
_03761
Position (kb)
3968
3969
3970
3971 Strain fitness (log2 ratio)
-1
0
1 at 3968.117 kb on + strand, within ECD_03758 at 3968.218 kb on - strand, within ECD_03758 at 3968.239 kb on + strand, within ECD_03758 at 3968.239 kb on + strand, within ECD_03758 at 3968.240 kb on - strand, within ECD_03758 at 3968.268 kb on + strand, within ECD_03758 at 3968.273 kb on - strand, within ECD_03758 at 3968.546 kb on + strand, within ECD_03758 at 3968.614 kb on - strand, within ECD_03758 at 3968.882 kb on + strand at 3969.006 kb on - strand at 3969.164 kb on + strand, within ECD_03759 at 3969.164 kb on + strand, within ECD_03759 at 3969.198 kb on + strand, within ECD_03759 at 3969.415 kb on + strand, within ECD_03759 at 3969.464 kb on + strand, within ECD_03759 at 3969.604 kb on + strand, within ECD_03759 at 3969.648 kb on - strand, within ECD_03759 at 3969.648 kb on - strand, within ECD_03759 at 3969.689 kb on + strand, within ECD_03759 at 3969.690 kb on - strand, within ECD_03759 at 3969.690 kb on - strand, within ECD_03759 at 3969.694 kb on - strand, within ECD_03759 at 3969.694 kb on - strand, within ECD_03759 at 3969.694 kb on - strand, within ECD_03759 at 3969.738 kb on - strand, within ECD_03759 at 3969.810 kb on - strand, within ECD_03759 at 3969.810 kb on - strand, within ECD_03759 at 3969.810 kb on - strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.813 kb on + strand, within ECD_03759 at 3969.814 kb on - strand, within ECD_03759 at 3969.818 kb on + strand, within ECD_03759 at 3969.818 kb on + strand, within ECD_03759 at 3969.818 kb on + strand, within ECD_03759 at 3969.819 kb on - strand, within ECD_03759 at 3969.849 kb on + strand, within ECD_03759 at 3969.904 kb on + strand, within ECD_03759 at 3969.905 kb on - strand, within ECD_03759 at 3969.932 kb on - strand, within ECD_03759 at 3970.018 kb on + strand, within ECD_03759 at 3970.018 kb on + strand, within ECD_03759 at 3970.062 kb on - strand, within ECD_03759 at 3970.075 kb on - strand, within ECD_03759 at 3970.169 kb on - strand at 3970.169 kb on - strand at 3970.181 kb on - strand at 3970.208 kb on + strand at 3970.208 kb on + strand at 3970.209 kb on - strand at 3970.209 kb on - strand at 3970.209 kb on - strand at 3970.212 kb on + strand at 3970.278 kb on - strand at 3970.312 kb on - strand at 3970.370 kb on + strand at 3970.780 kb on + strand, within ECD_03760 at 3970.871 kb on + strand, within ECD_03760 at 3970.871 kb on + strand, within ECD_03760 at 3970.905 kb on + strand, within ECD_03760 at 3970.906 kb on - strand, within ECD_03760 at 3970.906 kb on - strand, within ECD_03760 at 3970.906 kb on - strand, within ECD_03760 at 3971.061 kb on + strand at 3971.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,968,117 + ECD_03758 0.26 -0.6 3,968,218 - ECD_03758 0.36 -0.1 3,968,239 + ECD_03758 0.38 +1.0 3,968,239 + ECD_03758 0.38 +0.1 3,968,240 - ECD_03758 0.38 -0.5 3,968,268 + ECD_03758 0.41 +0.3 3,968,273 - ECD_03758 0.42 -0.1 3,968,546 + ECD_03758 0.70 -0.4 3,968,614 - ECD_03758 0.77 -0.4 3,968,882 + -0.2 3,969,006 - +0.0 3,969,164 + ECD_03759 0.17 +0.1 3,969,164 + ECD_03759 0.17 -0.1 3,969,198 + ECD_03759 0.20 +0.3 3,969,415 + ECD_03759 0.37 +0.6 3,969,464 + ECD_03759 0.41 +0.4 3,969,604 + ECD_03759 0.52 -0.1 3,969,648 - ECD_03759 0.56 -0.3 3,969,648 - ECD_03759 0.56 +0.7 3,969,689 + ECD_03759 0.59 -0.3 3,969,690 - ECD_03759 0.59 +0.4 3,969,690 - ECD_03759 0.59 -0.4 3,969,694 - ECD_03759 0.59 -0.1 3,969,694 - ECD_03759 0.59 -0.7 3,969,694 - ECD_03759 0.59 +0.6 3,969,738 - ECD_03759 0.63 +0.3 3,969,810 - ECD_03759 0.68 -1.2 3,969,810 - ECD_03759 0.68 +1.2 3,969,810 - ECD_03759 0.68 +0.3 3,969,813 + ECD_03759 0.69 +0.6 3,969,813 + ECD_03759 0.69 +0.7 3,969,813 + ECD_03759 0.69 +0.6 3,969,813 + ECD_03759 0.69 -0.0 3,969,813 + ECD_03759 0.69 +0.5 3,969,813 + ECD_03759 0.69 +0.6 3,969,813 + ECD_03759 0.69 +0.3 3,969,814 - ECD_03759 0.69 +0.5 3,969,818 + ECD_03759 0.69 -0.3 3,969,818 + ECD_03759 0.69 +0.3 3,969,818 + ECD_03759 0.69 +0.3 3,969,819 - ECD_03759 0.69 +0.3 3,969,849 + ECD_03759 0.71 +0.1 3,969,904 + ECD_03759 0.76 +0.3 3,969,905 - ECD_03759 0.76 -0.1 3,969,932 - ECD_03759 0.78 +0.5 3,970,018 + ECD_03759 0.85 +0.8 3,970,018 + ECD_03759 0.85 +0.5 3,970,062 - ECD_03759 0.88 +0.7 3,970,075 - ECD_03759 0.89 +0.3 3,970,169 - +0.5 3,970,169 - +0.8 3,970,181 - -0.3 3,970,208 + +0.4 3,970,208 + +0.2 3,970,209 - -0.1 3,970,209 - +0.2 3,970,209 - -0.5 3,970,212 + +0.1 3,970,278 - +0.5 3,970,312 - +1.2 3,970,370 + +0.3 3,970,780 + ECD_03760 0.69 +0.6 3,970,871 + ECD_03760 0.82 +0.0 3,970,871 + ECD_03760 0.82 -0.2 3,970,905 + ECD_03760 0.87 +0.5 3,970,906 - ECD_03760 0.87 -0.1 3,970,906 - ECD_03760 0.87 +0.2 3,970,906 - ECD_03760 0.87 +0.5 3,971,061 + +0.1 3,971,164 - -0.1
Or see this region's nucleotide sequence