Strain Fitness in Escherichia coli BL21 around ECD_03688

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03686 and ECD_03687 overlap by 4 nucleotidesECD_03687 and ECD_03688 overlap by 1 nucleotidesECD_03688 and ECD_03689 are separated by 83 nucleotides ECD_03686: ECD_03686 - DUF484 family protein, at 3,885,860 to 3,886,567 _03686 ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460 _03687 ECD_03688: ECD_03688 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 3,887,460 to 3,888,176 _03688 ECD_03689: ECD_03689 - DNA-dependent ATPase I and helicase II, at 3,888,260 to 3,890,422 _03689 Position (kb) 3887 3888 3889Strain fitness (log2 ratio) -2 -1 0 1at 3886.506 kb on + strandat 3886.506 kb on + strandat 3886.506 kb on + strandat 3886.507 kb on - strandat 3886.564 kb on - strandat 3886.574 kb on + strandat 3886.574 kb on + strandat 3886.595 kb on - strandat 3886.595 kb on - strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.598 kb on + strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.599 kb on - strandat 3886.626 kb on + strandat 3886.644 kb on + strandat 3886.644 kb on + strandat 3886.644 kb on + strandat 3886.645 kb on - strandat 3886.645 kb on - strandat 3886.649 kb on - strandat 3886.745 kb on + strand, within ECD_03687at 3886.807 kb on - strand, within ECD_03687at 3887.311 kb on - strand, within ECD_03687at 3887.388 kb on + strandat 3887.389 kb on - strandat 3887.422 kb on + strandat 3887.459 kb on - strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.523 kb on + strandat 3887.524 kb on - strandat 3887.567 kb on + strand, within ECD_03688at 3887.824 kb on + strand, within ECD_03688at 3887.825 kb on - strand, within ECD_03688at 3887.905 kb on - strand, within ECD_03688at 3887.960 kb on + strand, within ECD_03688at 3887.964 kb on + strand, within ECD_03688at 3887.964 kb on + strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3887.965 kb on - strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.010 kb on + strand, within ECD_03688at 3888.011 kb on - strand, within ECD_03688at 3888.172 kb on + strandat 3888.173 kb on - strandat 3888.189 kb on + strandat 3888.189 kb on + strandat 3888.189 kb on + strandat 3888.191 kb on + strandat 3888.191 kb on + strandat 3888.191 kb on + strandat 3888.193 kb on + strandat 3888.193 kb on + strandat 3888.193 kb on + strandat 3888.195 kb on + strandat 3888.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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3,886,506 + -0.1
3,886,506 + -0.2
3,886,506 + +1.1
3,886,507 - +1.2
3,886,564 - -1.1
3,886,574 + +0.3
3,886,574 + -0.6
3,886,595 - -2.0
3,886,595 - -1.1
3,886,598 + +0.1
3,886,598 + +0.5
3,886,598 + -0.6
3,886,598 + -0.0
3,886,598 + -0.1
3,886,598 + -0.8
3,886,598 + -0.1
3,886,599 - -0.2
3,886,599 - +0.7
3,886,599 - -0.3
3,886,599 - -0.8
3,886,599 - -0.8
3,886,626 + -0.4
3,886,644 + -0.7
3,886,644 + -0.7
3,886,644 + -1.8
3,886,645 - -1.2
3,886,645 - -0.5
3,886,649 - -0.2
3,886,745 + ECD_03687 0.20 -1.6
3,886,807 - ECD_03687 0.27 -0.7
3,887,311 - ECD_03687 0.83 -0.8
3,887,388 + -1.1
3,887,389 - -2.3
3,887,422 + -1.3
3,887,459 - +0.0
3,887,523 + +0.3
3,887,523 + +0.2
3,887,523 + -0.4
3,887,523 + -0.4
3,887,524 - +0.1
3,887,567 + ECD_03688 0.15 +0.4
3,887,824 + ECD_03688 0.51 +0.3
3,887,825 - ECD_03688 0.51 +0.4
3,887,905 - ECD_03688 0.62 +0.5
3,887,960 + ECD_03688 0.70 +0.0
3,887,964 + ECD_03688 0.70 +0.8
3,887,964 + ECD_03688 0.70 -0.0
3,887,965 - ECD_03688 0.70 -0.6
3,887,965 - ECD_03688 0.70 +0.2
3,887,965 - ECD_03688 0.70 -0.0
3,888,010 + ECD_03688 0.77 +0.1
3,888,010 + ECD_03688 0.77 +0.3
3,888,010 + ECD_03688 0.77 +0.7
3,888,010 + ECD_03688 0.77 -2.0
3,888,011 - ECD_03688 0.77 +0.1
3,888,172 + -0.3
3,888,173 - -0.5
3,888,189 + +0.2
3,888,189 + +0.1
3,888,189 + -0.5
3,888,191 + -0.1
3,888,191 + -0.3
3,888,191 + -0.0
3,888,193 + +0.1
3,888,193 + +0.1
3,888,193 + +0.2
3,888,195 + -0.2
3,888,239 + -0.6

Or see this region's nucleotide sequence