Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03686 and ECD_03687 overlap by 4 nucleotides ECD_03687 and ECD_03688 overlap by 1 nucleotides ECD_03688 and ECD_03689 are separated by 83 nucleotides
ECD_03686: ECD_03686 - DUF484 family protein, at 3,885,860 to 3,886,567
_03686
ECD_03687: ECD_03687 - site-specific tyrosine recombinase, at 3,886,564 to 3,887,460
_03687
ECD_03688: ECD_03688 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis, at 3,887,460 to 3,888,176
_03688
ECD_03689: ECD_03689 - DNA-dependent ATPase I and helicase II, at 3,888,260 to 3,890,422
_03689
Position (kb)
3887
3888
3889 Strain fitness (log2 ratio)
-2
-1
0
1 at 3886.506 kb on + strand at 3886.506 kb on + strand at 3886.506 kb on + strand at 3886.507 kb on - strand at 3886.564 kb on - strand at 3886.574 kb on + strand at 3886.574 kb on + strand at 3886.595 kb on - strand at 3886.595 kb on - strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.598 kb on + strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.599 kb on - strand at 3886.626 kb on + strand at 3886.644 kb on + strand at 3886.644 kb on + strand at 3886.644 kb on + strand at 3886.645 kb on - strand at 3886.645 kb on - strand at 3886.649 kb on - strand at 3886.745 kb on + strand, within ECD_03687 at 3886.807 kb on - strand, within ECD_03687 at 3887.311 kb on - strand, within ECD_03687 at 3887.388 kb on + strand at 3887.389 kb on - strand at 3887.422 kb on + strand at 3887.459 kb on - strand at 3887.523 kb on + strand at 3887.523 kb on + strand at 3887.523 kb on + strand at 3887.523 kb on + strand at 3887.524 kb on - strand at 3887.567 kb on + strand, within ECD_03688 at 3887.824 kb on + strand, within ECD_03688 at 3887.825 kb on - strand, within ECD_03688 at 3887.905 kb on - strand, within ECD_03688 at 3887.960 kb on + strand, within ECD_03688 at 3887.964 kb on + strand, within ECD_03688 at 3887.964 kb on + strand, within ECD_03688 at 3887.965 kb on - strand, within ECD_03688 at 3887.965 kb on - strand, within ECD_03688 at 3887.965 kb on - strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.010 kb on + strand, within ECD_03688 at 3888.011 kb on - strand, within ECD_03688 at 3888.172 kb on + strand at 3888.173 kb on - strand at 3888.189 kb on + strand at 3888.189 kb on + strand at 3888.189 kb on + strand at 3888.191 kb on + strand at 3888.191 kb on + strand at 3888.191 kb on + strand at 3888.193 kb on + strand at 3888.193 kb on + strand at 3888.193 kb on + strand at 3888.195 kb on + strand at 3888.239 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,886,506 + -0.1 3,886,506 + -0.2 3,886,506 + +1.1 3,886,507 - +1.2 3,886,564 - -1.1 3,886,574 + +0.3 3,886,574 + -0.6 3,886,595 - -2.0 3,886,595 - -1.1 3,886,598 + +0.1 3,886,598 + +0.5 3,886,598 + -0.6 3,886,598 + -0.0 3,886,598 + -0.1 3,886,598 + -0.8 3,886,598 + -0.1 3,886,599 - -0.2 3,886,599 - +0.7 3,886,599 - -0.3 3,886,599 - -0.8 3,886,599 - -0.8 3,886,626 + -0.4 3,886,644 + -0.7 3,886,644 + -0.7 3,886,644 + -1.8 3,886,645 - -1.2 3,886,645 - -0.5 3,886,649 - -0.2 3,886,745 + ECD_03687 0.20 -1.6 3,886,807 - ECD_03687 0.27 -0.7 3,887,311 - ECD_03687 0.83 -0.8 3,887,388 + -1.1 3,887,389 - -2.3 3,887,422 + -1.3 3,887,459 - +0.0 3,887,523 + +0.3 3,887,523 + +0.2 3,887,523 + -0.4 3,887,523 + -0.4 3,887,524 - +0.1 3,887,567 + ECD_03688 0.15 +0.4 3,887,824 + ECD_03688 0.51 +0.3 3,887,825 - ECD_03688 0.51 +0.4 3,887,905 - ECD_03688 0.62 +0.5 3,887,960 + ECD_03688 0.70 +0.0 3,887,964 + ECD_03688 0.70 +0.8 3,887,964 + ECD_03688 0.70 -0.0 3,887,965 - ECD_03688 0.70 -0.6 3,887,965 - ECD_03688 0.70 +0.2 3,887,965 - ECD_03688 0.70 -0.0 3,888,010 + ECD_03688 0.77 +0.1 3,888,010 + ECD_03688 0.77 +0.3 3,888,010 + ECD_03688 0.77 +0.7 3,888,010 + ECD_03688 0.77 -2.0 3,888,011 - ECD_03688 0.77 +0.1 3,888,172 + -0.3 3,888,173 - -0.5 3,888,189 + +0.2 3,888,189 + +0.1 3,888,189 + -0.5 3,888,191 + -0.1 3,888,191 + -0.3 3,888,191 + -0.0 3,888,193 + +0.1 3,888,193 + +0.1 3,888,193 + +0.2 3,888,195 + -0.2 3,888,239 + -0.6
Or see this region's nucleotide sequence