Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03413 and ECD_03414 are separated by 41 nucleotides ECD_03414 and ECD_03415 are separated by 45 nucleotides ECD_03415 and ECD_03416 are separated by 168 nucleotides
ECD_03413: ECD_03413 - O-acetyltransferase for enterobacterial common antigen (ECA), at 3,588,041 to 3,589,036
_03413
ECD_03414: ECD_03414 - YiaAB family inner membrane protein, tandem domains, at 3,589,078 to 3,589,515
_03414
ECD_03415: ECD_03415 - YiaAB family inner membrane protein, at 3,589,561 to 3,589,902
_03415
ECD_03416: ECD_03416 - xylulokinase, at 3,590,071 to 3,591,525
_03416
Position (kb)
3589
3590 Strain fitness (log2 ratio)
-1
0
1 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.561 kb on + strand, within ECD_03413 at 3588.562 kb on - strand, within ECD_03413 at 3588.562 kb on - strand, within ECD_03413 at 3588.562 kb on - strand, within ECD_03413 at 3588.564 kb on - strand, within ECD_03413 at 3588.564 kb on - strand, within ECD_03413 at 3588.565 kb on + strand, within ECD_03413 at 3588.566 kb on - strand, within ECD_03413 at 3588.566 kb on - strand, within ECD_03413 at 3588.566 kb on - strand, within ECD_03413 at 3588.587 kb on + strand, within ECD_03413 at 3588.618 kb on + strand, within ECD_03413 at 3588.619 kb on - strand, within ECD_03413 at 3588.708 kb on + strand, within ECD_03413 at 3588.708 kb on + strand, within ECD_03413 at 3588.708 kb on + strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.709 kb on - strand, within ECD_03413 at 3588.710 kb on + strand, within ECD_03413 at 3588.755 kb on + strand, within ECD_03413 at 3588.755 kb on + strand, within ECD_03413 at 3588.826 kb on + strand, within ECD_03413 at 3588.872 kb on + strand, within ECD_03413 at 3588.872 kb on + strand, within ECD_03413 at 3588.949 kb on + strand at 3588.949 kb on + strand at 3588.949 kb on + strand at 3588.988 kb on - strand at 3588.994 kb on + strand at 3588.994 kb on + strand at 3588.995 kb on - strand at 3589.002 kb on + strand at 3589.002 kb on + strand at 3589.003 kb on - strand at 3589.039 kb on - strand at 3589.071 kb on - strand at 3589.241 kb on - strand, within ECD_03414 at 3589.241 kb on - strand, within ECD_03414 at 3589.263 kb on + strand, within ECD_03414 at 3589.264 kb on - strand, within ECD_03414 at 3589.264 kb on - strand, within ECD_03414 at 3589.266 kb on + strand, within ECD_03414 at 3589.287 kb on + strand, within ECD_03414 at 3589.290 kb on - strand, within ECD_03414 at 3589.290 kb on - strand, within ECD_03414 at 3589.319 kb on + strand, within ECD_03414 at 3589.320 kb on - strand, within ECD_03414 at 3589.344 kb on - strand, within ECD_03414 at 3589.436 kb on + strand, within ECD_03414 at 3589.436 kb on + strand, within ECD_03414 at 3589.436 kb on + strand, within ECD_03414 at 3589.440 kb on + strand, within ECD_03414 at 3589.479 kb on + strand at 3589.480 kb on - strand at 3589.540 kb on + strand at 3589.545 kb on - strand at 3589.545 kb on - strand at 3589.545 kb on - strand at 3589.553 kb on + strand at 3589.553 kb on + strand at 3589.638 kb on + strand, within ECD_03415 at 3589.639 kb on - strand, within ECD_03415 at 3589.697 kb on - strand, within ECD_03415 at 3589.760 kb on + strand, within ECD_03415 at 3589.760 kb on + strand, within ECD_03415 at 3589.760 kb on + strand, within ECD_03415 at 3589.760 kb on + strand, within ECD_03415 at 3589.914 kb on + strand at 3589.918 kb on + strand at 3589.927 kb on + strand at 3589.933 kb on - strand at 3590.008 kb on + strand at 3590.024 kb on + strand at 3590.028 kb on + strand at 3590.099 kb on + strand at 3590.099 kb on + strand at 3590.159 kb on - strand at 3590.174 kb on - strand at 3590.174 kb on - strand at 3590.179 kb on + strand at 3590.355 kb on + strand, within ECD_03416 at 3590.370 kb on + strand, within ECD_03416 at 3590.371 kb on - strand, within ECD_03416 at 3590.414 kb on + strand, within ECD_03416 at 3590.414 kb on + strand, within ECD_03416 at 3590.415 kb on - strand, within ECD_03416 at 3590.503 kb on - strand, within ECD_03416 at 3590.514 kb on + strand, within ECD_03416 at 3590.515 kb on - strand, within ECD_03416 at 3590.666 kb on - strand, within ECD_03416 at 3590.701 kb on - strand, within ECD_03416 at 3590.701 kb on - strand, within ECD_03416 at 3590.705 kb on - strand, within ECD_03416 at 3590.725 kb on + strand, within ECD_03416 at 3590.751 kb on - strand, within ECD_03416 at 3590.788 kb on - strand, within ECD_03416 at 3590.887 kb on + strand, within ECD_03416 at 3590.888 kb on - strand, within ECD_03416 at 3590.902 kb on - strand, within ECD_03416
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,588,561 + ECD_03413 0.52 +0.1 3,588,561 + ECD_03413 0.52 +0.4 3,588,561 + ECD_03413 0.52 +1.4 3,588,561 + ECD_03413 0.52 -0.4 3,588,561 + ECD_03413 0.52 -0.5 3,588,561 + ECD_03413 0.52 +0.6 3,588,561 + ECD_03413 0.52 -0.1 3,588,561 + ECD_03413 0.52 -0.4 3,588,561 + ECD_03413 0.52 +0.1 3,588,562 - ECD_03413 0.52 -0.5 3,588,562 - ECD_03413 0.52 +0.2 3,588,562 - ECD_03413 0.52 +0.2 3,588,564 - ECD_03413 0.53 -0.4 3,588,564 - ECD_03413 0.53 +0.6 3,588,565 + ECD_03413 0.53 +0.4 3,588,566 - ECD_03413 0.53 -0.3 3,588,566 - ECD_03413 0.53 +0.5 3,588,566 - ECD_03413 0.53 -0.6 3,588,587 + ECD_03413 0.55 +0.3 3,588,618 + ECD_03413 0.58 +0.1 3,588,619 - ECD_03413 0.58 +0.4 3,588,708 + ECD_03413 0.67 -0.1 3,588,708 + ECD_03413 0.67 +0.5 3,588,708 + ECD_03413 0.67 +0.4 3,588,709 - ECD_03413 0.67 +0.0 3,588,709 - ECD_03413 0.67 -0.3 3,588,709 - ECD_03413 0.67 +0.5 3,588,709 - ECD_03413 0.67 -0.4 3,588,709 - ECD_03413 0.67 +0.6 3,588,710 + ECD_03413 0.67 +0.3 3,588,755 + ECD_03413 0.72 +0.3 3,588,755 + ECD_03413 0.72 +0.2 3,588,826 + ECD_03413 0.79 +0.8 3,588,872 + ECD_03413 0.83 +0.1 3,588,872 + ECD_03413 0.83 +0.2 3,588,949 + +0.1 3,588,949 + +0.7 3,588,949 + +0.2 3,588,988 - -0.0 3,588,994 + +0.1 3,588,994 + -0.9 3,588,995 - -0.7 3,589,002 + +0.1 3,589,002 + +0.7 3,589,003 - -0.2 3,589,039 - +0.8 3,589,071 - +0.2 3,589,241 - ECD_03414 0.37 +0.3 3,589,241 - ECD_03414 0.37 -0.0 3,589,263 + ECD_03414 0.42 +0.9 3,589,264 - ECD_03414 0.42 +0.7 3,589,264 - ECD_03414 0.42 +0.4 3,589,266 + ECD_03414 0.43 +0.3 3,589,287 + ECD_03414 0.48 -0.1 3,589,290 - ECD_03414 0.48 -0.1 3,589,290 - ECD_03414 0.48 +0.5 3,589,319 + ECD_03414 0.55 +0.1 3,589,320 - ECD_03414 0.55 -0.1 3,589,344 - ECD_03414 0.61 +0.1 3,589,436 + ECD_03414 0.82 +0.2 3,589,436 + ECD_03414 0.82 -0.3 3,589,436 + ECD_03414 0.82 -0.6 3,589,440 + ECD_03414 0.83 -0.5 3,589,479 + -0.1 3,589,480 - -0.3 3,589,540 + -0.2 3,589,545 - +0.6 3,589,545 - +0.1 3,589,545 - +0.0 3,589,553 + -0.0 3,589,553 + +0.3 3,589,638 + ECD_03415 0.23 -0.3 3,589,639 - ECD_03415 0.23 -0.3 3,589,697 - ECD_03415 0.40 -0.2 3,589,760 + ECD_03415 0.58 +0.2 3,589,760 + ECD_03415 0.58 -0.2 3,589,760 + ECD_03415 0.58 +0.5 3,589,760 + ECD_03415 0.58 -0.1 3,589,914 + +0.1 3,589,918 + +0.0 3,589,927 + +0.1 3,589,933 - +0.2 3,590,008 + -0.0 3,590,024 + -0.5 3,590,028 + -0.0 3,590,099 + +0.1 3,590,099 + -0.2 3,590,159 - +0.0 3,590,174 - +0.7 3,590,174 - +0.1 3,590,179 + -0.2 3,590,355 + ECD_03416 0.20 +1.2 3,590,370 + ECD_03416 0.21 +0.3 3,590,371 - ECD_03416 0.21 -0.3 3,590,414 + ECD_03416 0.24 +1.1 3,590,414 + ECD_03416 0.24 +0.0 3,590,415 - ECD_03416 0.24 +0.0 3,590,503 - ECD_03416 0.30 +0.2 3,590,514 + ECD_03416 0.30 +0.3 3,590,515 - ECD_03416 0.31 +0.1 3,590,666 - ECD_03416 0.41 -0.7 3,590,701 - ECD_03416 0.43 -0.5 3,590,701 - ECD_03416 0.43 +0.1 3,590,705 - ECD_03416 0.44 -0.3 3,590,725 + ECD_03416 0.45 +0.4 3,590,751 - ECD_03416 0.47 +0.1 3,590,788 - ECD_03416 0.49 +0.1 3,590,887 + ECD_03416 0.56 -0.2 3,590,888 - ECD_03416 0.56 -0.1 3,590,902 - ECD_03416 0.57 +0.1
Or see this region's nucleotide sequence