Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03337 and ECD_03338 are separated by 365 nucleotides ECD_03338 and ECD_03339 are separated by 261 nucleotides
ECD_03337: ECD_03337 - putative membrane fusion protein (MFP) of efflux pump, at 3,491,919 to 3,492,986
_03337
ECD_03338: ECD_03338 - DUF4049 family protein, at 3,493,352 to 3,494,974
_03338
ECD_03339: ECD_03339 - hypothetical protein, at 3,495,236 to 3,496,843
_03339
Position (kb)
3493
3494
3495 Strain fitness (log2 ratio)
-1
0
1 at 3492.426 kb on - strand, within ECD_03337 at 3492.426 kb on - strand, within ECD_03337 at 3492.445 kb on - strand, within ECD_03337 at 3492.456 kb on - strand, within ECD_03337 at 3492.816 kb on - strand, within ECD_03337 at 3492.974 kb on + strand at 3492.975 kb on - strand at 3492.975 kb on - strand at 3493.009 kb on + strand at 3493.148 kb on + strand at 3493.148 kb on + strand at 3493.149 kb on - strand at 3493.149 kb on - strand at 3493.149 kb on - strand at 3493.149 kb on - strand at 3493.179 kb on - strand at 3493.194 kb on - strand at 3493.194 kb on - strand at 3493.200 kb on - strand at 3493.212 kb on + strand at 3493.213 kb on - strand at 3493.250 kb on - strand at 3493.302 kb on - strand at 3493.330 kb on + strand at 3493.331 kb on - strand at 3493.334 kb on - strand at 3493.362 kb on - strand at 3493.390 kb on + strand at 3493.391 kb on - strand at 3493.440 kb on - strand at 3493.474 kb on + strand at 3493.474 kb on + strand at 3493.475 kb on - strand at 3493.475 kb on - strand at 3493.475 kb on - strand at 3493.504 kb on + strand at 3493.593 kb on - strand, within ECD_03338 at 3493.595 kb on - strand, within ECD_03338 at 3493.598 kb on + strand, within ECD_03338 at 3493.641 kb on + strand, within ECD_03338 at 3493.814 kb on - strand, within ECD_03338 at 3494.243 kb on + strand, within ECD_03338 at 3494.390 kb on - strand, within ECD_03338 at 3494.843 kb on - strand at 3495.009 kb on + strand at 3495.437 kb on - strand, within ECD_03339 at 3495.955 kb on + strand, within ECD_03339
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 3,492,426 - ECD_03337 0.47 +0.3 3,492,426 - ECD_03337 0.47 +0.1 3,492,445 - ECD_03337 0.49 -1.3 3,492,456 - ECD_03337 0.50 +0.1 3,492,816 - ECD_03337 0.84 -0.1 3,492,974 + -0.1 3,492,975 - +0.8 3,492,975 - -0.1 3,493,009 + -0.4 3,493,148 + -0.3 3,493,148 + -0.1 3,493,149 - -0.5 3,493,149 - -1.1 3,493,149 - +0.4 3,493,149 - -0.3 3,493,179 - +0.4 3,493,194 - +0.5 3,493,194 - +0.3 3,493,200 - +0.6 3,493,212 + +0.1 3,493,213 - -0.3 3,493,250 - -0.1 3,493,302 - -0.1 3,493,330 + -1.0 3,493,331 - -0.2 3,493,334 - +0.7 3,493,362 - +0.3 3,493,390 + -0.0 3,493,391 - -0.6 3,493,440 - +0.8 3,493,474 + +0.1 3,493,474 + +0.9 3,493,475 - -0.1 3,493,475 - -0.3 3,493,475 - +0.2 3,493,504 + -0.4 3,493,593 - ECD_03338 0.15 +0.6 3,493,595 - ECD_03338 0.15 -0.7 3,493,598 + ECD_03338 0.15 -0.2 3,493,641 + ECD_03338 0.18 +0.1 3,493,814 - ECD_03338 0.28 -0.9 3,494,243 + ECD_03338 0.55 +0.2 3,494,390 - ECD_03338 0.64 +0.5 3,494,843 - -0.2 3,495,009 + -0.3 3,495,437 - ECD_03339 0.12 -0.5 3,495,955 + ECD_03339 0.45 +0.0
Or see this region's nucleotide sequence