Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01673 and ECD_01674 are separated by 131 nucleotides ECD_01674 and ECD_01675 are separated by 3 nucleotides ECD_01675 and ECD_01676 are separated by 62 nucleotides
ECD_01673: ECD_01673 - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible, at 1,732,851 to 1,733,897
_01673
ECD_01674: ECD_01674 - hemin uptake protein HemP-like protein, at 1,734,029 to 1,734,220
_01674
ECD_01675: ECD_01675 - UPF0061 family protein, at 1,734,224 to 1,735,660
_01675
ECD_01676: ECD_01676 - anti-FlhD4C2 factor, inactive EAL family phosphodiesterase, at 1,735,723 to 1,736,265
_01676
Position (kb) 1734
1735
1736 Strain fitness (log2 ratio) -1
0
1 at 1733.468 kb on + strand, within ECD_01673 at 1734.130 kb on - strand, within ECD_01674 at 1734.280 kb on - strand at 1734.344 kb on - strand at 1734.975 kb on - strand, within ECD_01675 at 1734.975 kb on - strand, within ECD_01675 at 1735.018 kb on - strand, within ECD_01675 at 1735.361 kb on - strand, within ECD_01675 at 1735.472 kb on - strand, within ECD_01675 at 1735.612 kb on - strand at 1735.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,733,468 + ECD_01673 0.59 -0.3 1,734,130 - ECD_01674 0.53 -0.0 1,734,280 - -0.6 1,734,344 - -0.9 1,734,975 - ECD_01675 0.52 +0.5 1,734,975 - ECD_01675 0.52 +0.4 1,735,018 - ECD_01675 0.55 -0.5 1,735,361 - ECD_01675 0.79 -0.2 1,735,472 - ECD_01675 0.87 +0.9 1,735,612 - +0.4 1,735,660 + -0.1
Or see this region's nucleotide sequence