Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01321 and ECD_01322 are separated by 51 nucleotides ECD_01322 and ECD_01323 are separated by 1 nucleotides ECD_01323 and ECD_01324 are separated by 78 nucleotides ECD_01324 and ECD_01325 overlap by 8 nucleotides ECD_01325 and ECD_01326 are separated by 56 nucleotides
ECD_01321: ECD_01321 - tRNA s(2)C32 thioltransferase, iron sulfur cluster protein, at 1,396,181 to 1,397,116
_01321
ECD_01322: ECD_01322 - Rac prophage; integrase, at 1,397,168 to 1,398,403
_01322
ECD_01323: ECD_01323 - Rac prophage; conserved protein, at 1,398,405 to 1,398,620
_01323
ECD_01324: ECD_01324 - DUF1187 family protein, Rac prophage; putative double-strand break reduction protein, at 1,398,699 to 1,398,908
_01324
ECD_01325: ECD_01325 - Rac prophage; restriction alleviation protein, at 1,398,901 to 1,399,095
_01325
ECD_01326: ECD_01326 - Rac prophage; recombination and repair protein, at 1,399,152 to 1,399,961
_01326
Position (kb)
1397
1398
1399 Strain fitness (log2 ratio)
-1
0
1 at 1396.607 kb on - strand, within ECD_01321 at 1396.607 kb on - strand, within ECD_01321 at 1396.960 kb on - strand, within ECD_01321 at 1397.015 kb on - strand, within ECD_01321 at 1397.015 kb on - strand, within ECD_01321 at 1397.282 kb on - strand at 1397.327 kb on - strand, within ECD_01322 at 1397.416 kb on - strand, within ECD_01322 at 1397.542 kb on - strand, within ECD_01322 at 1397.631 kb on - strand, within ECD_01322 at 1397.914 kb on - strand, within ECD_01322
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 1,396,607 - ECD_01321 0.46 +0.4 1,396,607 - ECD_01321 0.46 +0.3 1,396,960 - ECD_01321 0.83 -0.7 1,397,015 - ECD_01321 0.89 +0.2 1,397,015 - ECD_01321 0.89 +0.5 1,397,282 - +0.4 1,397,327 - ECD_01322 0.13 +0.6 1,397,416 - ECD_01322 0.20 +1.2 1,397,542 - ECD_01322 0.30 -0.2 1,397,631 - ECD_01322 0.37 +0.4 1,397,914 - ECD_01322 0.60 +0.6
Or see this region's nucleotide sequence