Strain Fitness in Escherichia coli BL21 around ECD_01322

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01321 and ECD_01322 are separated by 51 nucleotidesECD_01322 and ECD_01323 are separated by 1 nucleotidesECD_01323 and ECD_01324 are separated by 78 nucleotidesECD_01324 and ECD_01325 overlap by 8 nucleotidesECD_01325 and ECD_01326 are separated by 56 nucleotides ECD_01321: ECD_01321 - tRNA s(2)C32 thioltransferase, iron sulfur cluster protein, at 1,396,181 to 1,397,116 _01321 ECD_01322: ECD_01322 - Rac prophage; integrase, at 1,397,168 to 1,398,403 _01322 ECD_01323: ECD_01323 - Rac prophage; conserved protein, at 1,398,405 to 1,398,620 _01323 ECD_01324: ECD_01324 - DUF1187 family protein, Rac prophage; putative double-strand break reduction protein, at 1,398,699 to 1,398,908 _01324 ECD_01325: ECD_01325 - Rac prophage; restriction alleviation protein, at 1,398,901 to 1,399,095 _01325 ECD_01326: ECD_01326 - Rac prophage; recombination and repair protein, at 1,399,152 to 1,399,961 _01326 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -1 0 1at 1396.607 kb on - strand, within ECD_01321at 1396.607 kb on - strand, within ECD_01321at 1396.960 kb on - strand, within ECD_01321at 1397.015 kb on - strand, within ECD_01321at 1397.015 kb on - strand, within ECD_01321at 1397.282 kb on - strandat 1397.327 kb on - strand, within ECD_01322at 1397.416 kb on - strand, within ECD_01322at 1397.542 kb on - strand, within ECD_01322at 1397.631 kb on - strand, within ECD_01322at 1397.914 kb on - strand, within ECD_01322

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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1,396,607 - ECD_01321 0.46 +0.4
1,396,607 - ECD_01321 0.46 +0.3
1,396,960 - ECD_01321 0.83 -0.7
1,397,015 - ECD_01321 0.89 +0.2
1,397,015 - ECD_01321 0.89 +0.5
1,397,282 - +0.4
1,397,327 - ECD_01322 0.13 +0.6
1,397,416 - ECD_01322 0.20 +1.2
1,397,542 - ECD_01322 0.30 -0.2
1,397,631 - ECD_01322 0.37 +0.4
1,397,914 - ECD_01322 0.60 +0.6

Or see this region's nucleotide sequence