Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00673 and ECD_00674 are separated by 35 nucleotides ECD_00674 and ECD_00675 overlap by 4 nucleotides ECD_00675 and ECD_00676 are separated by 151 nucleotides
ECD_00673: ECD_00673 - UPF0271 family protein, at 703,729 to 704,463
_00673
ECD_00674: ECD_00674 - endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase, at 704,499 to 705,290
_00674
ECD_00675: ECD_00675 - regulator of aidB expression; inner membrane protein, at 705,287 to 706,333
_00675
ECD_00676: ECD_00676 - putative fimbrial protein, at 706,485 to 707,546
_00676
Position (kb) 705
706
707 Strain fitness (log2 ratio) -1
0
1 at 704.304 kb on - strand, within ECD_00673 at 704.427 kb on + strand at 704.471 kb on + strand at 704.687 kb on - strand, within ECD_00674 at 704.810 kb on + strand, within ECD_00674 at 705.006 kb on + strand, within ECD_00674 at 705.006 kb on + strand, within ECD_00674 at 705.006 kb on + strand, within ECD_00674 at 705.155 kb on + strand, within ECD_00674 at 705.155 kb on + strand, within ECD_00674 at 705.156 kb on - strand, within ECD_00674 at 705.352 kb on + strand at 705.385 kb on + strand at 705.470 kb on - strand, within ECD_00675 at 705.484 kb on + strand, within ECD_00675 at 705.627 kb on + strand, within ECD_00675 at 705.627 kb on + strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.628 kb on - strand, within ECD_00675 at 705.790 kb on + strand, within ECD_00675 at 705.911 kb on - strand, within ECD_00675 at 706.266 kb on - strand at 706.497 kb on - strand at 706.638 kb on - strand, within ECD_00676 at 706.929 kb on - strand, within ECD_00676 at 706.999 kb on + strand, within ECD_00676 at 707.000 kb on - strand, within ECD_00676 at 707.021 kb on - strand, within ECD_00676 at 707.158 kb on + strand, within ECD_00676 at 707.159 kb on - strand, within ECD_00676 at 707.261 kb on - strand, within ECD_00676 at 707.261 kb on - strand, within ECD_00676 at 707.303 kb on - strand, within ECD_00676
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 704,304 - ECD_00673 0.78 -0.3 704,427 + +0.4 704,471 + -0.1 704,687 - ECD_00674 0.24 -0.0 704,810 + ECD_00674 0.39 +0.2 705,006 + ECD_00674 0.64 +0.4 705,006 + ECD_00674 0.64 +0.0 705,006 + ECD_00674 0.64 +0.6 705,155 + ECD_00674 0.83 -0.0 705,155 + ECD_00674 0.83 -0.0 705,156 - ECD_00674 0.83 -0.3 705,352 + -0.0 705,385 + +0.6 705,470 - ECD_00675 0.17 -0.4 705,484 + ECD_00675 0.19 -0.4 705,627 + ECD_00675 0.32 -0.4 705,627 + ECD_00675 0.32 +0.5 705,628 - ECD_00675 0.33 +0.0 705,628 - ECD_00675 0.33 +0.3 705,628 - ECD_00675 0.33 +0.5 705,628 - ECD_00675 0.33 -0.1 705,790 + ECD_00675 0.48 +0.5 705,911 - ECD_00675 0.60 +0.4 706,266 - +1.2 706,497 - -0.5 706,638 - ECD_00676 0.14 +0.3 706,929 - ECD_00676 0.42 -0.5 706,999 + ECD_00676 0.48 +0.5 707,000 - ECD_00676 0.48 +0.3 707,021 - ECD_00676 0.50 -0.7 707,158 + ECD_00676 0.63 +1.0 707,159 - ECD_00676 0.63 +0.0 707,261 - ECD_00676 0.73 -0.8 707,261 - ECD_00676 0.73 -0.4 707,303 - ECD_00676 0.77 -1.1
Or see this region's nucleotide sequence