Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00299 and ECD_00300 are separated by 76 nucleotides ECD_00300 and ECD_00301 are separated by 190 nucleotides
ECD_00299: ECD_00299 - lactose-inducible lac operon transcriptional repressor, at 335,963 to 337,045
_00299
ECD_00300: ECD_00300 - mhp operon transcriptional activator, at 337,122 to 337,955
_00300
ECD_00301: ECD_00301 - 3-(3-hydroxyphenyl)propionate hydroxylase, at 338,146 to 339,810
_00301
Position (kb) 337
338 Strain fitness (log2 ratio) -2
-1
0
1 at 337.129 kb on - strand at 337.164 kb on - strand at 337.264 kb on + strand, within ECD_00300 at 337.264 kb on + strand, within ECD_00300 at 337.265 kb on - strand, within ECD_00300 at 337.265 kb on - strand, within ECD_00300 at 337.265 kb on - strand, within ECD_00300 at 337.430 kb on - strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.777 kb on + strand, within ECD_00300 at 337.778 kb on - strand, within ECD_00300 at 337.778 kb on - strand, within ECD_00300 at 337.778 kb on - strand, within ECD_00300 at 337.886 kb on + strand at 337.891 kb on - strand at 337.978 kb on - strand at 338.043 kb on + strand at 338.044 kb on - strand at 338.089 kb on + strand at 338.153 kb on + strand at 338.154 kb on - strand at 338.154 kb on - strand at 338.188 kb on - strand at 338.289 kb on + strand at 338.290 kb on - strand at 338.385 kb on + strand, within ECD_00301 at 338.386 kb on - strand, within ECD_00301 at 338.386 kb on - strand, within ECD_00301 at 338.779 kb on - strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.782 kb on + strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.783 kb on - strand, within ECD_00301 at 338.837 kb on + strand, within ECD_00301 at 338.853 kb on + strand, within ECD_00301
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 337,129 - +0.3 337,164 - +0.0 337,264 + ECD_00300 0.17 +0.4 337,264 + ECD_00300 0.17 +1.1 337,265 - ECD_00300 0.17 -0.3 337,265 - ECD_00300 0.17 +0.8 337,265 - ECD_00300 0.17 -0.5 337,430 - ECD_00300 0.37 +0.1 337,777 + ECD_00300 0.79 +0.5 337,777 + ECD_00300 0.79 -0.2 337,777 + ECD_00300 0.79 -2.0 337,777 + ECD_00300 0.79 -0.2 337,778 - ECD_00300 0.79 -0.4 337,778 - ECD_00300 0.79 -1.3 337,778 - ECD_00300 0.79 +0.2 337,886 + +0.4 337,891 - -0.5 337,978 - -0.0 338,043 + +0.3 338,044 - +0.1 338,089 + -0.9 338,153 + +0.2 338,154 - -0.0 338,154 - +0.5 338,188 - +0.2 338,289 + -0.1 338,290 - +0.2 338,385 + ECD_00301 0.14 +1.2 338,386 - ECD_00301 0.14 +0.1 338,386 - ECD_00301 0.14 +0.8 338,779 - ECD_00301 0.38 -0.3 338,782 + ECD_00301 0.38 +0.2 338,782 + ECD_00301 0.38 +0.6 338,782 + ECD_00301 0.38 +0.6 338,782 + ECD_00301 0.38 -0.1 338,782 + ECD_00301 0.38 -0.2 338,782 + ECD_00301 0.38 +1.1 338,783 - ECD_00301 0.38 -0.3 338,783 - ECD_00301 0.38 +0.0 338,783 - ECD_00301 0.38 +0.5 338,783 - ECD_00301 0.38 -0.3 338,783 - ECD_00301 0.38 -0.7 338,837 + ECD_00301 0.42 +0.5 338,853 + ECD_00301 0.42 +0.2
Or see this region's nucleotide sequence