Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16410 and CA264_16415 are separated by 298 nucleotides CA264_16415 and CA264_16420 are separated by 53 nucleotides
CA264_16410: CA264_16410 - hypothetical protein, at 3,817,065 to 3,817,976
_16410
CA264_16415: CA264_16415 - hypothetical protein, at 3,818,275 to 3,818,502
_16415
CA264_16420: CA264_16420 - molecular chaperone HtpG, at 3,818,556 to 3,820,373
_16420
Position (kb)
3818
3819 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3817.294 kb on + strand, within CA264_16410 at 3817.303 kb on + strand, within CA264_16410 at 3817.307 kb on - strand, within CA264_16410 at 3817.307 kb on - strand, within CA264_16410 at 3817.351 kb on - strand, within CA264_16410 at 3817.372 kb on + strand, within CA264_16410 at 3817.372 kb on + strand, within CA264_16410 at 3817.372 kb on + strand, within CA264_16410 at 3817.372 kb on + strand, within CA264_16410 at 3817.450 kb on + strand, within CA264_16410 at 3817.529 kb on - strand, within CA264_16410 at 3817.550 kb on - strand, within CA264_16410 at 3817.609 kb on + strand, within CA264_16410 at 3817.609 kb on + strand, within CA264_16410 at 3817.609 kb on + strand, within CA264_16410 at 3817.609 kb on + strand, within CA264_16410 at 3817.610 kb on - strand, within CA264_16410 at 3817.610 kb on - strand, within CA264_16410 at 3817.610 kb on - strand, within CA264_16410 at 3817.612 kb on + strand, within CA264_16410 at 3817.612 kb on + strand, within CA264_16410 at 3817.615 kb on + strand, within CA264_16410 at 3817.616 kb on - strand, within CA264_16410 at 3817.630 kb on + strand, within CA264_16410 at 3817.630 kb on + strand, within CA264_16410 at 3817.661 kb on - strand, within CA264_16410 at 3817.661 kb on - strand, within CA264_16410 at 3817.687 kb on + strand, within CA264_16410 at 3817.708 kb on + strand, within CA264_16410 at 3817.739 kb on - strand, within CA264_16410 at 3817.739 kb on - strand, within CA264_16410 at 3817.739 kb on - strand, within CA264_16410 at 3817.907 kb on + strand at 3817.948 kb on - strand at 3817.958 kb on + strand at 3817.959 kb on - strand at 3818.045 kb on - strand at 3818.045 kb on - strand at 3818.059 kb on + strand at 3818.060 kb on - strand at 3818.063 kb on + strand at 3818.063 kb on + strand at 3818.064 kb on - strand at 3818.064 kb on - strand at 3818.091 kb on + strand at 3818.091 kb on + strand at 3818.094 kb on - strand at 3818.094 kb on - strand at 3818.098 kb on - strand at 3818.113 kb on - strand at 3818.125 kb on - strand at 3818.178 kb on - strand at 3818.193 kb on - strand at 3818.195 kb on - strand at 3818.299 kb on - strand, within CA264_16415 at 3818.535 kb on + strand at 3818.731 kb on + strand at 3818.731 kb on + strand at 3818.753 kb on + strand, within CA264_16420 at 3819.077 kb on - strand, within CA264_16420 at 3819.132 kb on - strand, within CA264_16420 at 3819.132 kb on - strand, within CA264_16420 at 3819.132 kb on - strand, within CA264_16420 at 3819.133 kb on + strand, within CA264_16420 at 3819.133 kb on + strand, within CA264_16420 at 3819.134 kb on - strand, within CA264_16420 at 3819.134 kb on - strand, within CA264_16420 at 3819.191 kb on - strand, within CA264_16420 at 3819.198 kb on + strand, within CA264_16420 at 3819.198 kb on + strand, within CA264_16420 at 3819.199 kb on - strand, within CA264_16420 at 3819.199 kb on - strand, within CA264_16420 at 3819.199 kb on - strand, within CA264_16420 at 3819.206 kb on - strand, within CA264_16420 at 3819.209 kb on - strand, within CA264_16420 at 3819.209 kb on - strand, within CA264_16420 at 3819.256 kb on - strand, within CA264_16420 at 3819.284 kb on - strand, within CA264_16420 at 3819.382 kb on + strand, within CA264_16420 at 3819.382 kb on + strand, within CA264_16420 at 3819.382 kb on + strand, within CA264_16420 at 3819.382 kb on + strand, within CA264_16420 at 3819.383 kb on - strand, within CA264_16420 at 3819.383 kb on - strand, within CA264_16420 at 3819.383 kb on - strand, within CA264_16420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 3,817,294 + CA264_16410 0.25 -0.5 3,817,303 + CA264_16410 0.26 +0.5 3,817,307 - CA264_16410 0.27 -1.0 3,817,307 - CA264_16410 0.27 -0.9 3,817,351 - CA264_16410 0.31 -1.0 3,817,372 + CA264_16410 0.34 +2.1 3,817,372 + CA264_16410 0.34 +0.1 3,817,372 + CA264_16410 0.34 -0.8 3,817,372 + CA264_16410 0.34 -2.0 3,817,450 + CA264_16410 0.42 -0.9 3,817,529 - CA264_16410 0.51 +0.5 3,817,550 - CA264_16410 0.53 -0.9 3,817,609 + CA264_16410 0.60 -0.8 3,817,609 + CA264_16410 0.60 -0.9 3,817,609 + CA264_16410 0.60 -1.0 3,817,609 + CA264_16410 0.60 +0.4 3,817,610 - CA264_16410 0.60 -1.0 3,817,610 - CA264_16410 0.60 -1.6 3,817,610 - CA264_16410 0.60 -0.5 3,817,612 + CA264_16410 0.60 -0.2 3,817,612 + CA264_16410 0.60 +0.2 3,817,615 + CA264_16410 0.60 -1.4 3,817,616 - CA264_16410 0.60 -0.7 3,817,630 + CA264_16410 0.62 -0.6 3,817,630 + CA264_16410 0.62 -0.8 3,817,661 - CA264_16410 0.65 -1.0 3,817,661 - CA264_16410 0.65 +0.2 3,817,687 + CA264_16410 0.68 -0.1 3,817,708 + CA264_16410 0.71 -1.9 3,817,739 - CA264_16410 0.74 -0.6 3,817,739 - CA264_16410 0.74 -0.2 3,817,739 - CA264_16410 0.74 +0.1 3,817,907 + -0.9 3,817,948 - -1.5 3,817,958 + -0.2 3,817,959 - +1.0 3,818,045 - +0.0 3,818,045 - -1.1 3,818,059 + -0.3 3,818,060 - -0.2 3,818,063 + -0.3 3,818,063 + -0.3 3,818,064 - -0.3 3,818,064 - +2.1 3,818,091 + -0.3 3,818,091 + +0.8 3,818,094 - -0.8 3,818,094 - +0.2 3,818,098 - -0.3 3,818,113 - -0.0 3,818,125 - -0.4 3,818,178 - -0.1 3,818,193 - -0.2 3,818,195 - +0.2 3,818,299 - CA264_16415 0.11 -1.0 3,818,535 + +0.6 3,818,731 + -0.7 3,818,731 + -0.3 3,818,753 + CA264_16420 0.11 +2.1 3,819,077 - CA264_16420 0.29 +0.0 3,819,132 - CA264_16420 0.32 -1.0 3,819,132 - CA264_16420 0.32 +1.6 3,819,132 - CA264_16420 0.32 -0.3 3,819,133 + CA264_16420 0.32 -1.1 3,819,133 + CA264_16420 0.32 +0.9 3,819,134 - CA264_16420 0.32 -0.2 3,819,134 - CA264_16420 0.32 -0.4 3,819,191 - CA264_16420 0.35 -0.5 3,819,198 + CA264_16420 0.35 +0.4 3,819,198 + CA264_16420 0.35 -0.0 3,819,199 - CA264_16420 0.35 +0.6 3,819,199 - CA264_16420 0.35 -0.4 3,819,199 - CA264_16420 0.35 -0.3 3,819,206 - CA264_16420 0.36 -1.0 3,819,209 - CA264_16420 0.36 +0.3 3,819,209 - CA264_16420 0.36 +1.0 3,819,256 - CA264_16420 0.39 +0.3 3,819,284 - CA264_16420 0.40 -1.0 3,819,382 + CA264_16420 0.45 +0.0 3,819,382 + CA264_16420 0.45 -0.4 3,819,382 + CA264_16420 0.45 +0.5 3,819,382 + CA264_16420 0.45 +0.0 3,819,383 - CA264_16420 0.45 -0.0 3,819,383 - CA264_16420 0.45 +0.0 3,819,383 - CA264_16420 0.45 -0.6
Or see this region's nucleotide sequence