Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03320 and CA264_03325 are separated by 248 nucleotides CA264_03325 and CA264_03330 are separated by 147 nucleotides CA264_03330 and CA264_03335 are separated by 106 nucleotides
CA264_03320: CA264_03320 - hypothetical protein, at 778,991 to 780,139
_03320
CA264_03325: CA264_03325 - hypothetical protein, at 780,388 to 780,597
_03325
CA264_03330: CA264_03330 - peptide-methionine (R)-S-oxide reductase, at 780,745 to 781,200
_03330
CA264_03335: CA264_03335 - glyoxylate/hydroxypyruvate reductase A, at 781,307 to 782,236
_03335
Position (kb) 780
781
782 Strain fitness (log2 ratio) -1
0
1
2 at 779.860 kb on - strand, within CA264_03320 at 780.166 kb on + strand at 780.166 kb on + strand at 780.166 kb on + strand at 780.169 kb on + strand at 780.170 kb on - strand at 780.170 kb on - strand at 780.191 kb on - strand at 780.214 kb on - strand at 780.220 kb on + strand at 780.323 kb on + strand at 780.324 kb on - strand at 780.338 kb on + strand at 780.339 kb on - strand at 780.339 kb on - strand at 780.342 kb on + strand at 780.354 kb on - strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.358 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.362 kb on + strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.363 kb on - strand at 780.364 kb on + strand at 780.364 kb on + strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.365 kb on - strand at 780.372 kb on - strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.377 kb on + strand at 780.378 kb on - strand at 780.379 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.384 kb on + strand at 780.387 kb on - strand at 780.472 kb on + strand, within CA264_03325 at 780.473 kb on - strand, within CA264_03325 at 780.566 kb on - strand, within CA264_03325 at 780.586 kb on + strand at 780.634 kb on - strand at 780.643 kb on - strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.647 kb on + strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.648 kb on - strand at 780.657 kb on + strand at 780.657 kb on + strand at 780.658 kb on - strand at 780.658 kb on - strand at 780.668 kb on + strand at 780.668 kb on + strand at 780.677 kb on + strand at 780.685 kb on - strand at 780.700 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.702 kb on + strand at 780.713 kb on + strand at 780.713 kb on + strand at 780.714 kb on - strand at 780.792 kb on - strand, within CA264_03330 at 780.903 kb on - strand, within CA264_03330 at 781.040 kb on + strand, within CA264_03330 at 781.050 kb on + strand, within CA264_03330 at 781.163 kb on + strand at 781.177 kb on + strand at 781.269 kb on + strand at 781.304 kb on + strand at 781.304 kb on + strand at 781.304 kb on + strand at 781.305 kb on - strand at 781.305 kb on - strand at 781.317 kb on + strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.318 kb on - strand at 781.320 kb on + strand at 781.321 kb on - strand at 781.323 kb on + strand at 781.324 kb on - strand at 781.327 kb on + strand at 781.328 kb on - strand at 781.472 kb on + strand, within CA264_03335 at 781.570 kb on - strand, within CA264_03335 at 781.646 kb on + strand, within CA264_03335 at 781.647 kb on - strand, within CA264_03335 at 781.688 kb on + strand, within CA264_03335 at 781.689 kb on - strand, within CA264_03335 at 781.689 kb on - strand, within CA264_03335 at 781.782 kb on + strand, within CA264_03335 at 781.827 kb on + strand, within CA264_03335 at 781.830 kb on - strand, within CA264_03335 at 781.918 kb on - strand, within CA264_03335 at 781.959 kb on - strand, within CA264_03335 at 781.963 kb on + strand, within CA264_03335 at 781.964 kb on - strand, within CA264_03335 at 782.166 kb on + strand at 782.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 779,860 - CA264_03320 0.76 -0.1 780,166 + +0.1 780,166 + -0.6 780,166 + +0.3 780,169 + -0.0 780,170 - +1.3 780,170 - +0.1 780,191 - -0.1 780,214 - +0.7 780,220 + +0.5 780,323 + +0.1 780,324 - +0.6 780,338 + -1.0 780,339 - -1.1 780,339 - +0.1 780,342 + -0.5 780,354 - -0.6 780,358 + -0.5 780,358 + -0.1 780,358 + -0.7 780,358 + -0.7 780,358 + -0.1 780,362 + +0.3 780,362 + -0.8 780,362 + -0.6 780,362 + -0.5 780,363 - -0.5 780,363 - -0.3 780,363 - -0.1 780,363 - -0.2 780,364 + -0.5 780,364 + -0.1 780,365 - -0.4 780,365 - +0.3 780,365 - -0.8 780,372 - +0.5 780,377 + -1.5 780,377 + +0.5 780,377 + +0.3 780,378 - -0.1 780,379 + +0.0 780,384 + -0.4 780,384 + +0.2 780,384 + -0.0 780,384 + -0.2 780,387 - -0.9 780,472 + CA264_03325 0.40 +0.1 780,473 - CA264_03325 0.40 +0.3 780,566 - CA264_03325 0.85 -0.0 780,586 + +0.0 780,634 - +0.4 780,643 - +1.7 780,647 + -0.5 780,647 + +0.9 780,647 + +0.5 780,647 + -0.1 780,647 + -0.0 780,647 + +0.2 780,648 - -0.5 780,648 - -0.4 780,648 - +0.6 780,657 + -0.7 780,657 + -1.3 780,658 - +1.3 780,658 - -0.3 780,668 + -0.6 780,668 + -0.2 780,677 + +0.9 780,685 - -0.2 780,700 + +0.0 780,702 + +0.8 780,702 + -0.0 780,702 + -1.4 780,713 + +1.9 780,713 + -0.4 780,714 - -0.3 780,792 - CA264_03330 0.10 -1.3 780,903 - CA264_03330 0.35 -1.6 781,040 + CA264_03330 0.65 -0.6 781,050 + CA264_03330 0.67 +0.3 781,163 + +0.5 781,177 + -0.1 781,269 + +0.4 781,304 + -0.8 781,304 + -0.1 781,304 + -0.9 781,305 - +1.2 781,305 - +1.2 781,317 + -1.0 781,318 - -0.4 781,318 - -0.4 781,318 - -0.3 781,318 - -0.3 781,320 + -0.9 781,321 - -0.2 781,323 + +0.1 781,324 - -0.5 781,327 + -0.3 781,328 - -0.1 781,472 + CA264_03335 0.18 -0.1 781,570 - CA264_03335 0.28 -0.2 781,646 + CA264_03335 0.36 +0.4 781,647 - CA264_03335 0.37 -0.4 781,688 + CA264_03335 0.41 -0.7 781,689 - CA264_03335 0.41 -0.6 781,689 - CA264_03335 0.41 -0.2 781,782 + CA264_03335 0.51 -0.4 781,827 + CA264_03335 0.56 -0.5 781,830 - CA264_03335 0.56 -0.1 781,918 - CA264_03335 0.66 -0.4 781,959 - CA264_03335 0.70 +0.0 781,963 + CA264_03335 0.71 +0.8 781,964 - CA264_03335 0.71 -0.5 782,166 + -0.4 782,174 + -0.5
Or see this region's nucleotide sequence