Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02570

Experiment: m.b. Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02560 and CA264_02565 are separated by 102 nucleotidesCA264_02565 and CA264_02570 are separated by 11 nucleotidesCA264_02570 and CA264_02575 are separated by 236 nucleotidesCA264_02575 and CA264_02580 are separated by 86 nucleotidesCA264_02580 and CA264_02585 are separated by 7 nucleotides CA264_02560: CA264_02560 - DUF4153 domain-containing protein, at 598,093 to 599,337 _02560 CA264_02565: CA264_02565 - hypothetical protein, at 599,440 to 599,706 _02565 CA264_02570: CA264_02570 - hypothetical protein, at 599,718 to 600,008 _02570 CA264_02575: CA264_02575 - potassium transporter KefB, at 600,245 to 600,583 _02575 CA264_02580: CA264_02580 - transcriptional regulator, at 600,670 to 600,978 _02580 CA264_02585: CA264_02585 - hypothetical protein, at 600,986 to 601,609 _02585 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1at 598.761 kb on + strand, within CA264_02560at 598.761 kb on + strand, within CA264_02560at 598.762 kb on - strand, within CA264_02560at 598.803 kb on - strand, within CA264_02560at 598.820 kb on + strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.845 kb on - strand, within CA264_02560at 598.905 kb on + strand, within CA264_02560at 598.906 kb on - strand, within CA264_02560at 599.056 kb on - strand, within CA264_02560at 599.095 kb on + strand, within CA264_02560at 599.096 kb on - strand, within CA264_02560at 599.119 kb on + strand, within CA264_02560at 599.183 kb on + strand, within CA264_02560at 599.188 kb on + strand, within CA264_02560at 599.188 kb on + strand, within CA264_02560at 599.320 kb on + strandat 599.478 kb on + strand, within CA264_02565at 599.494 kb on + strand, within CA264_02565at 599.573 kb on + strand, within CA264_02565at 599.681 kb on + strandat 599.681 kb on + strandat 599.681 kb on + strandat 599.746 kb on - strandat 599.788 kb on - strand, within CA264_02570at 599.890 kb on - strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.931 kb on + strand, within CA264_02570at 599.932 kb on - strand, within CA264_02570at 599.985 kb on - strandat 599.985 kb on - strandat 600.008 kb on + strandat 600.078 kb on - strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.099 kb on + strandat 600.136 kb on + strandat 600.171 kb on - strandat 600.191 kb on + strandat 600.192 kb on - strandat 600.221 kb on - strandat 600.303 kb on + strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.304 kb on - strand, within CA264_02575at 600.305 kb on + strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.323 kb on - strand, within CA264_02575at 600.324 kb on + strand, within CA264_02575at 600.428 kb on - strand, within CA264_02575at 600.589 kb on + strandat 600.599 kb on - strandat 600.603 kb on + strandat 600.715 kb on + strand, within CA264_02580at 600.715 kb on + strand, within CA264_02580at 600.715 kb on + strand, within CA264_02580at 600.716 kb on - strand, within CA264_02580at 600.759 kb on - strand, within CA264_02580at 600.951 kb on + strandat 600.955 kb on + strandat 600.955 kb on + strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.957 kb on + strandat 600.964 kb on + strandat 600.964 kb on + strandat 600.964 kb on + strandat 600.965 kb on - strandat 600.980 kb on + strandat 601.005 kb on + strandat 601.007 kb on + strandat 601.008 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml
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598,761 + CA264_02560 0.54 +0.1
598,761 + CA264_02560 0.54 +0.1
598,762 - CA264_02560 0.54 +0.2
598,803 - CA264_02560 0.57 +0.1
598,820 + CA264_02560 0.58 -0.2
598,845 - CA264_02560 0.60 +0.3
598,845 - CA264_02560 0.60 +0.3
598,905 + CA264_02560 0.65 -0.1
598,906 - CA264_02560 0.65 -0.9
599,056 - CA264_02560 0.77 -0.2
599,095 + CA264_02560 0.80 -0.3
599,096 - CA264_02560 0.81 +0.2
599,119 + CA264_02560 0.82 +0.2
599,183 + CA264_02560 0.88 -0.1
599,188 + CA264_02560 0.88 +0.4
599,188 + CA264_02560 0.88 +0.5
599,320 + -1.0
599,478 + CA264_02565 0.14 +0.2
599,494 + CA264_02565 0.20 -0.1
599,573 + CA264_02565 0.50 -0.8
599,681 + -1.2
599,681 + +0.0
599,681 + +0.1
599,746 - +0.2
599,788 - CA264_02570 0.24 -1.4
599,890 - CA264_02570 0.59 -0.9
599,931 + CA264_02570 0.73 -0.5
599,931 + CA264_02570 0.73 +0.3
599,932 - CA264_02570 0.74 -1.1
599,985 - -0.2
599,985 - +0.3
600,008 + -0.5
600,078 - -0.0
600,099 + +0.6
600,099 + +0.1
600,099 + -0.0
600,136 + +0.8
600,171 - -0.3
600,191 + +0.0
600,192 - +0.4
600,221 - +0.5
600,303 + CA264_02575 0.17 -0.6
600,304 - CA264_02575 0.17 +0.3
600,304 - CA264_02575 0.17 +1.0
600,305 + CA264_02575 0.18 +0.9
600,323 - CA264_02575 0.23 -0.1
600,323 - CA264_02575 0.23 -1.6
600,324 + CA264_02575 0.23 +0.3
600,428 - CA264_02575 0.54 -0.1
600,589 + +0.0
600,599 - -0.4
600,603 + +0.1
600,715 + CA264_02580 0.15 +0.2
600,715 + CA264_02580 0.15 +0.9
600,715 + CA264_02580 0.15 +0.0
600,716 - CA264_02580 0.15 -0.4
600,759 - CA264_02580 0.29 +0.3
600,951 + +0.2
600,955 + +0.0
600,955 + -0.1
600,956 - -0.8
600,956 - -0.8
600,957 + +0.3
600,964 + -0.4
600,964 + -1.9
600,964 + -0.4
600,965 - -0.6
600,980 + -0.1
601,005 + +1.1
601,007 + +0.0
601,008 - -0.6

Or see this region's nucleotide sequence