Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01670

Experiment: m.b. Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01665 and CA264_01670 are separated by 437 nucleotidesCA264_01670 and CA264_01675 are separated by 136 nucleotidesCA264_01675 and CA264_01680 are separated by 89 nucleotides CA264_01665: CA264_01665 - phenylalanine 4-monooxygenase, at 391,074 to 391,817 _01665 CA264_01670: CA264_01670 - ABC transporter, at 392,255 to 394,132 _01670 CA264_01675: CA264_01675 - hypothetical protein, at 394,269 to 394,658 _01675 CA264_01680: CA264_01680 - RDD family protein, at 394,748 to 395,251 _01680 Position (kb) 392 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 391.725 kb on - strand, within CA264_01665at 391.725 kb on - strand, within CA264_01665at 391.767 kb on + strandat 391.768 kb on - strandat 391.768 kb on - strandat 391.790 kb on - strandat 391.818 kb on - strandat 391.818 kb on - strandat 391.834 kb on - strandat 391.959 kb on + strandat 391.960 kb on - strandat 391.975 kb on - strandat 391.983 kb on + strandat 391.986 kb on + strandat 391.987 kb on - strandat 391.987 kb on - strandat 391.995 kb on + strandat 391.999 kb on - strandat 392.003 kb on - strandat 392.004 kb on + strandat 392.004 kb on + strandat 392.005 kb on - strandat 392.025 kb on + strandat 392.032 kb on + strandat 392.034 kb on + strandat 392.035 kb on - strandat 392.035 kb on - strandat 392.035 kb on - strandat 392.250 kb on + strandat 392.257 kb on - strandat 392.439 kb on + strandat 392.456 kb on - strand, within CA264_01670at 392.541 kb on - strand, within CA264_01670at 392.580 kb on + strand, within CA264_01670at 392.637 kb on - strand, within CA264_01670at 392.651 kb on - strand, within CA264_01670at 392.715 kb on - strand, within CA264_01670at 392.725 kb on + strand, within CA264_01670at 392.726 kb on - strand, within CA264_01670at 392.786 kb on + strand, within CA264_01670at 392.834 kb on + strand, within CA264_01670at 392.835 kb on - strand, within CA264_01670at 392.835 kb on - strand, within CA264_01670at 392.844 kb on + strand, within CA264_01670at 392.844 kb on + strand, within CA264_01670at 392.845 kb on - strand, within CA264_01670at 392.921 kb on + strand, within CA264_01670at 392.971 kb on - strand, within CA264_01670at 392.971 kb on - strand, within CA264_01670at 392.991 kb on + strand, within CA264_01670at 392.992 kb on - strand, within CA264_01670at 393.023 kb on + strand, within CA264_01670at 393.061 kb on + strand, within CA264_01670at 393.128 kb on + strand, within CA264_01670at 393.128 kb on + strand, within CA264_01670at 393.131 kb on - strand, within CA264_01670at 393.132 kb on + strand, within CA264_01670at 393.133 kb on - strand, within CA264_01670at 393.133 kb on - strand, within CA264_01670at 393.133 kb on - strand, within CA264_01670at 393.133 kb on - strand, within CA264_01670at 393.297 kb on + strand, within CA264_01670at 393.297 kb on + strand, within CA264_01670at 393.432 kb on + strand, within CA264_01670at 393.432 kb on + strand, within CA264_01670at 393.444 kb on + strand, within CA264_01670at 393.444 kb on + strand, within CA264_01670at 393.445 kb on - strand, within CA264_01670at 393.449 kb on - strand, within CA264_01670at 393.451 kb on - strand, within CA264_01670at 393.596 kb on - strand, within CA264_01670at 393.629 kb on + strand, within CA264_01670at 393.636 kb on - strand, within CA264_01670at 393.831 kb on + strand, within CA264_01670at 393.831 kb on + strand, within CA264_01670at 393.839 kb on + strand, within CA264_01670at 393.839 kb on + strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.885 kb on - strand, within CA264_01670at 393.953 kb on + strandat 393.954 kb on - strandat 393.954 kb on - strandat 394.106 kb on + strandat 394.121 kb on + strandat 394.125 kb on + strandat 394.256 kb on + strandat 394.347 kb on + strand, within CA264_01675at 394.347 kb on + strand, within CA264_01675at 394.348 kb on - strand, within CA264_01675at 394.349 kb on + strand, within CA264_01675at 394.356 kb on + strand, within CA264_01675at 394.356 kb on + strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.357 kb on - strand, within CA264_01675at 394.358 kb on + strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.359 kb on - strand, within CA264_01675at 394.400 kb on + strand, within CA264_01675at 394.401 kb on - strand, within CA264_01675at 394.401 kb on - strand, within CA264_01675at 394.495 kb on + strand, within CA264_01675at 394.515 kb on + strand, within CA264_01675at 394.516 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.527 kb on - strand, within CA264_01675at 394.529 kb on + strand, within CA264_01675at 394.563 kb on + strand, within CA264_01675at 394.597 kb on - strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.618 kb on + strand, within CA264_01675at 394.619 kb on - strand, within CA264_01675at 394.623 kb on + strandat 394.623 kb on + strandat 394.623 kb on + strandat 394.659 kb on - strandat 394.662 kb on - strandat 394.728 kb on + strandat 394.749 kb on + strandat 394.866 kb on + strand, within CA264_01680at 394.933 kb on + strand, within CA264_01680at 394.978 kb on + strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.979 kb on - strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.980 kb on + strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.981 kb on - strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 394.983 kb on + strand, within CA264_01680at 395.056 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.088 kb on + strand, within CA264_01680at 395.123 kb on + strand, within CA264_01680at 395.125 kb on + strand, within CA264_01680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml
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391,725 - CA264_01665 0.88 +0.1
391,725 - CA264_01665 0.88 -1.0
391,767 + -2.5
391,768 - -1.2
391,768 - -0.8
391,790 - -0.7
391,818 - -1.0
391,818 - -0.2
391,834 - -0.2
391,959 + -0.2
391,960 - +0.0
391,975 - -0.1
391,983 + -0.5
391,986 + +0.5
391,987 - +0.7
391,987 - +0.8
391,995 + -0.2
391,999 - -0.3
392,003 - +0.2
392,004 + -0.4
392,004 + +0.4
392,005 - -0.6
392,025 + -0.3
392,032 + +0.2
392,034 + +0.2
392,035 - -0.4
392,035 - -0.5
392,035 - -0.3
392,250 + +1.6
392,257 - +1.0
392,439 + -0.8
392,456 - CA264_01670 0.11 +0.3
392,541 - CA264_01670 0.15 -0.9
392,580 + CA264_01670 0.17 +0.1
392,637 - CA264_01670 0.20 +0.1
392,651 - CA264_01670 0.21 -0.9
392,715 - CA264_01670 0.24 -0.5
392,725 + CA264_01670 0.25 -0.1
392,726 - CA264_01670 0.25 -0.7
392,786 + CA264_01670 0.28 -0.6
392,834 + CA264_01670 0.31 -0.1
392,835 - CA264_01670 0.31 +0.1
392,835 - CA264_01670 0.31 -1.0
392,844 + CA264_01670 0.31 -0.0
392,844 + CA264_01670 0.31 -1.3
392,845 - CA264_01670 0.31 -0.3
392,921 + CA264_01670 0.35 -0.6
392,971 - CA264_01670 0.38 -0.2
392,971 - CA264_01670 0.38 -0.6
392,991 + CA264_01670 0.39 -0.6
392,992 - CA264_01670 0.39 -1.2
393,023 + CA264_01670 0.41 -0.6
393,061 + CA264_01670 0.43 +0.7
393,128 + CA264_01670 0.46 -0.6
393,128 + CA264_01670 0.46 -0.6
393,131 - CA264_01670 0.47 -0.6
393,132 + CA264_01670 0.47 -0.8
393,133 - CA264_01670 0.47 -1.8
393,133 - CA264_01670 0.47 -0.5
393,133 - CA264_01670 0.47 +0.4
393,133 - CA264_01670 0.47 -0.0
393,297 + CA264_01670 0.55 +1.0
393,297 + CA264_01670 0.55 -0.9
393,432 + CA264_01670 0.63 -0.3
393,432 + CA264_01670 0.63 -0.1
393,444 + CA264_01670 0.63 -0.9
393,444 + CA264_01670 0.63 -0.2
393,445 - CA264_01670 0.63 +0.4
393,449 - CA264_01670 0.64 -0.8
393,451 - CA264_01670 0.64 +0.3
393,596 - CA264_01670 0.71 +0.4
393,629 + CA264_01670 0.73 +0.5
393,636 - CA264_01670 0.74 +0.3
393,831 + CA264_01670 0.84 +0.2
393,831 + CA264_01670 0.84 +0.1
393,839 + CA264_01670 0.84 +0.5
393,839 + CA264_01670 0.84 +0.2
393,885 - CA264_01670 0.87 -0.2
393,885 - CA264_01670 0.87 +0.1
393,885 - CA264_01670 0.87 -0.6
393,953 + -0.3
393,954 - -0.3
393,954 - -1.1
394,106 + -1.1
394,121 + +0.4
394,125 + +0.1
394,256 + -0.2
394,347 + CA264_01675 0.20 +0.1
394,347 + CA264_01675 0.20 +0.1
394,348 - CA264_01675 0.20 +1.3
394,349 + CA264_01675 0.21 -0.3
394,356 + CA264_01675 0.22 +2.4
394,356 + CA264_01675 0.22 +0.1
394,357 - CA264_01675 0.23 -0.3
394,357 - CA264_01675 0.23 +0.5
394,357 - CA264_01675 0.23 +0.3
394,358 + CA264_01675 0.23 +1.7
394,359 - CA264_01675 0.23 -0.2
394,359 - CA264_01675 0.23 +0.5
394,359 - CA264_01675 0.23 -0.6
394,400 + CA264_01675 0.34 +0.0
394,401 - CA264_01675 0.34 -0.1
394,401 - CA264_01675 0.34 -0.4
394,495 + CA264_01675 0.58 -0.2
394,515 + CA264_01675 0.63 -0.1
394,516 - CA264_01675 0.63 -0.0
394,527 - CA264_01675 0.66 +0.1
394,527 - CA264_01675 0.66 -0.8
394,527 - CA264_01675 0.66 -1.0
394,529 + CA264_01675 0.67 -1.5
394,563 + CA264_01675 0.75 +0.2
394,597 - CA264_01675 0.84 -0.2
394,618 + CA264_01675 0.89 -0.1
394,618 + CA264_01675 0.89 -0.8
394,619 - CA264_01675 0.90 +0.6
394,623 + -1.6
394,623 + +0.1
394,623 + +0.0
394,659 - +0.4
394,662 - -0.3
394,728 + +0.2
394,749 + +0.3
394,866 + CA264_01680 0.23 -0.4
394,933 + CA264_01680 0.37 -1.0
394,978 + CA264_01680 0.46 -0.6
394,979 - CA264_01680 0.46 -0.2
394,979 - CA264_01680 0.46 +0.0
394,979 - CA264_01680 0.46 -0.2
394,979 - CA264_01680 0.46 +0.5
394,980 + CA264_01680 0.46 -0.2
394,980 + CA264_01680 0.46 +0.2
394,980 + CA264_01680 0.46 -1.4
394,980 + CA264_01680 0.46 -0.8
394,980 + CA264_01680 0.46 +0.6
394,980 + CA264_01680 0.46 -0.8
394,980 + CA264_01680 0.46 -0.1
394,980 + CA264_01680 0.46 +0.2
394,981 - CA264_01680 0.46 -0.1
394,981 - CA264_01680 0.46 -0.3
394,981 - CA264_01680 0.46 -0.7
394,981 - CA264_01680 0.46 +0.5
394,983 + CA264_01680 0.47 +0.3
394,983 + CA264_01680 0.47 +0.0
395,056 + CA264_01680 0.61 +0.8
395,088 + CA264_01680 0.67 -2.4
395,088 + CA264_01680 0.67 +0.9
395,123 + CA264_01680 0.74 -0.2
395,125 + CA264_01680 0.75 -1.0

Or see this region's nucleotide sequence