Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00710

Experiment: m.b. Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00700 and CA264_00705 are separated by 142 nucleotidesCA264_00705 and CA264_00710 are separated by 69 nucleotidesCA264_00710 and CA264_00715 are separated by 9 nucleotides CA264_00700: CA264_00700 - hypothetical protein, at 152,562 to 153,335 _00700 CA264_00705: CA264_00705 - hypothetical protein, at 153,478 to 153,810 _00705 CA264_00710: CA264_00710 - hypothetical protein, at 153,880 to 154,635 _00710 CA264_00715: CA264_00715 - hypothetical protein, at 154,645 to 155,742 _00715 Position (kb) 153 154 155Strain fitness (log2 ratio) -2 -1 0 1at 152.940 kb on + strand, within CA264_00700at 152.940 kb on + strand, within CA264_00700at 153.061 kb on + strand, within CA264_00700at 153.083 kb on - strand, within CA264_00700at 153.105 kb on - strand, within CA264_00700at 153.105 kb on - strand, within CA264_00700at 153.128 kb on - strand, within CA264_00700at 153.173 kb on - strand, within CA264_00700at 153.173 kb on - strand, within CA264_00700at 153.205 kb on + strand, within CA264_00700at 153.205 kb on + strand, within CA264_00700at 153.205 kb on + strand, within CA264_00700at 153.205 kb on + strand, within CA264_00700at 153.206 kb on - strand, within CA264_00700at 153.206 kb on - strand, within CA264_00700at 153.217 kb on - strand, within CA264_00700at 153.217 kb on - strand, within CA264_00700at 153.217 kb on - strand, within CA264_00700at 153.218 kb on + strand, within CA264_00700at 153.300 kb on + strandat 153.300 kb on + strandat 153.300 kb on + strandat 153.301 kb on - strandat 153.303 kb on + strandat 153.304 kb on - strandat 153.304 kb on - strandat 153.312 kb on + strandat 153.312 kb on + strandat 153.313 kb on - strandat 153.313 kb on - strandat 153.363 kb on + strandat 153.363 kb on + strandat 153.364 kb on - strandat 153.378 kb on - strandat 153.379 kb on + strandat 153.386 kb on + strandat 153.387 kb on - strandat 153.390 kb on + strandat 153.390 kb on + strandat 153.390 kb on + strandat 153.390 kb on + strandat 153.391 kb on - strandat 153.393 kb on - strandat 153.422 kb on - strandat 153.423 kb on + strandat 153.424 kb on - strandat 153.424 kb on - strandat 153.468 kb on + strandat 153.469 kb on - strandat 153.469 kb on - strandat 153.479 kb on + strandat 153.479 kb on + strandat 153.479 kb on + strandat 153.479 kb on + strandat 153.479 kb on + strandat 153.480 kb on - strandat 153.480 kb on - strandat 153.480 kb on - strandat 153.482 kb on - strandat 153.512 kb on + strand, within CA264_00705at 153.513 kb on - strand, within CA264_00705at 153.614 kb on + strand, within CA264_00705at 153.614 kb on + strand, within CA264_00705at 153.615 kb on - strand, within CA264_00705at 153.752 kb on + strand, within CA264_00705at 153.753 kb on - strand, within CA264_00705at 153.753 kb on - strand, within CA264_00705at 153.792 kb on + strandat 153.792 kb on + strandat 153.793 kb on - strandat 153.817 kb on + strandat 153.871 kb on + strandat 153.887 kb on - strandat 154.092 kb on - strand, within CA264_00710at 154.149 kb on - strand, within CA264_00710at 154.149 kb on - strand, within CA264_00710at 154.174 kb on - strand, within CA264_00710at 154.286 kb on + strand, within CA264_00710at 154.314 kb on + strand, within CA264_00710at 154.315 kb on - strand, within CA264_00710at 154.370 kb on + strand, within CA264_00710at 154.415 kb on + strand, within CA264_00710at 154.416 kb on - strand, within CA264_00710at 154.416 kb on - strand, within CA264_00710at 154.423 kb on - strand, within CA264_00710at 154.642 kb on + strandat 154.643 kb on - strandat 154.756 kb on - strand, within CA264_00715at 154.780 kb on + strand, within CA264_00715at 154.782 kb on + strand, within CA264_00715at 154.810 kb on - strand, within CA264_00715at 154.811 kb on + strand, within CA264_00715at 154.811 kb on + strand, within CA264_00715at 154.812 kb on - strand, within CA264_00715at 154.830 kb on - strand, within CA264_00715at 154.830 kb on - strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.877 kb on + strand, within CA264_00715at 154.878 kb on - strand, within CA264_00715at 154.878 kb on - strand, within CA264_00715at 154.878 kb on - strand, within CA264_00715at 154.977 kb on + strand, within CA264_00715at 155.097 kb on + strand, within CA264_00715at 155.142 kb on - strand, within CA264_00715at 155.150 kb on + strand, within CA264_00715at 155.169 kb on + strand, within CA264_00715at 155.170 kb on - strand, within CA264_00715at 155.204 kb on - strand, within CA264_00715at 155.308 kb on + strand, within CA264_00715at 155.319 kb on + strand, within CA264_00715at 155.320 kb on - strand, within CA264_00715at 155.320 kb on - strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715at 155.598 kb on + strand, within CA264_00715

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml
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152,940 + CA264_00700 0.49 -0.5
152,940 + CA264_00700 0.49 -2.2
153,061 + CA264_00700 0.64 +0.2
153,083 - CA264_00700 0.67 -1.6
153,105 - CA264_00700 0.70 -0.2
153,105 - CA264_00700 0.70 +0.2
153,128 - CA264_00700 0.73 +0.7
153,173 - CA264_00700 0.79 -0.6
153,173 - CA264_00700 0.79 +0.3
153,205 + CA264_00700 0.83 -0.9
153,205 + CA264_00700 0.83 +0.6
153,205 + CA264_00700 0.83 +0.1
153,205 + CA264_00700 0.83 -0.2
153,206 - CA264_00700 0.83 +1.5
153,206 - CA264_00700 0.83 -1.2
153,217 - CA264_00700 0.85 +0.1
153,217 - CA264_00700 0.85 +0.5
153,217 - CA264_00700 0.85 +0.7
153,218 + CA264_00700 0.85 -1.3
153,300 + -0.1
153,300 + +1.2
153,300 + +0.2
153,301 - +0.2
153,303 + -1.1
153,304 - +0.7
153,304 - -0.6
153,312 + -0.6
153,312 + +0.0
153,313 - -0.1
153,313 - +1.5
153,363 + +0.3
153,363 + +0.9
153,364 - -0.2
153,378 - -1.1
153,379 + -1.2
153,386 + -0.3
153,387 - +0.7
153,390 + -1.1
153,390 + -0.1
153,390 + -0.4
153,390 + -0.8
153,391 - -0.1
153,393 - +0.0
153,422 - +0.0
153,423 + -0.8
153,424 - +0.1
153,424 - -0.5
153,468 + -0.2
153,469 - +0.2
153,469 - -0.0
153,479 + -0.1
153,479 + +0.7
153,479 + -0.7
153,479 + -0.3
153,479 + +0.5
153,480 - -0.8
153,480 - +1.3
153,480 - +1.5
153,482 - +1.5
153,512 + CA264_00705 0.10 -0.2
153,513 - CA264_00705 0.11 -0.2
153,614 + CA264_00705 0.41 -0.2
153,614 + CA264_00705 0.41 -1.1
153,615 - CA264_00705 0.41 -0.9
153,752 + CA264_00705 0.82 +1.2
153,753 - CA264_00705 0.83 +0.7
153,753 - CA264_00705 0.83 -0.6
153,792 + -0.2
153,792 + +0.4
153,793 - -0.4
153,817 + +0.3
153,871 + -0.2
153,887 - -0.6
154,092 - CA264_00710 0.28 +1.4
154,149 - CA264_00710 0.36 -0.5
154,149 - CA264_00710 0.36 -0.6
154,174 - CA264_00710 0.39 -0.4
154,286 + CA264_00710 0.54 +0.5
154,314 + CA264_00710 0.57 -0.5
154,315 - CA264_00710 0.58 +0.5
154,370 + CA264_00710 0.65 -0.2
154,415 + CA264_00710 0.71 -1.0
154,416 - CA264_00710 0.71 +0.3
154,416 - CA264_00710 0.71 -0.3
154,423 - CA264_00710 0.72 +1.4
154,642 + -0.6
154,643 - +0.2
154,756 - CA264_00715 0.10 +0.1
154,780 + CA264_00715 0.12 -0.8
154,782 + CA264_00715 0.12 +0.6
154,810 - CA264_00715 0.15 -0.2
154,811 + CA264_00715 0.15 -0.5
154,811 + CA264_00715 0.15 -1.1
154,812 - CA264_00715 0.15 +1.4
154,830 - CA264_00715 0.17 +0.9
154,830 - CA264_00715 0.17 -0.2
154,877 + CA264_00715 0.21 -0.1
154,877 + CA264_00715 0.21 +0.0
154,877 + CA264_00715 0.21 +0.3
154,877 + CA264_00715 0.21 +0.2
154,877 + CA264_00715 0.21 -0.3
154,878 - CA264_00715 0.21 -1.1
154,878 - CA264_00715 0.21 +0.1
154,878 - CA264_00715 0.21 +0.9
154,977 + CA264_00715 0.30 +0.7
155,097 + CA264_00715 0.41 +1.3
155,142 - CA264_00715 0.45 -0.4
155,150 + CA264_00715 0.46 -0.8
155,169 + CA264_00715 0.48 -0.7
155,170 - CA264_00715 0.48 -0.1
155,204 - CA264_00715 0.51 +0.4
155,308 + CA264_00715 0.60 -0.1
155,319 + CA264_00715 0.61 +0.7
155,320 - CA264_00715 0.61 +1.5
155,320 - CA264_00715 0.61 +0.5
155,598 + CA264_00715 0.87 -0.4
155,598 + CA264_00715 0.87 +0.1
155,598 + CA264_00715 0.87 -0.2

Or see this region's nucleotide sequence