Experiment: m.b. Chloramphenicol 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00005 and CA264_00010 are separated by 90 nucleotides CA264_00010 and CA264_00015 are separated by 410 nucleotides
CA264_00005: CA264_00005 - chromosomal replication initiation protein DnaA, at 1 to 1,425
_00005
CA264_00010: CA264_00010 - hypothetical protein, at 1,516 to 1,944
_00010
CA264_00015: CA264_00015 - hypothetical protein, at 2,355 to 3,854
_00015
Position (kb)
1
2 Strain fitness (log2 ratio)
-2
-1
0
1 at 1.437 kb on - strand at 1.496 kb on + strand at 1.551 kb on - strand at 1.634 kb on + strand, within CA264_00010 at 1.754 kb on + strand, within CA264_00010 at 1.755 kb on - strand, within CA264_00010 at 1.755 kb on - strand, within CA264_00010 at 1.766 kb on - strand, within CA264_00010 at 1.775 kb on + strand, within CA264_00010 at 1.776 kb on - strand, within CA264_00010 at 1.853 kb on + strand, within CA264_00010 at 1.854 kb on - strand, within CA264_00010 at 1.857 kb on - strand, within CA264_00010 at 1.857 kb on - strand, within CA264_00010 at 1.862 kb on + strand, within CA264_00010 at 1.874 kb on + strand, within CA264_00010 at 1.875 kb on - strand, within CA264_00010 at 1.902 kb on + strand at 1.903 kb on - strand at 1.903 kb on - strand at 1.947 kb on + strand at 1.979 kb on - strand at 1.991 kb on - strand at 2.007 kb on + strand at 2.008 kb on - strand at 2.008 kb on - strand at 2.028 kb on + strand at 2.028 kb on + strand at 2.029 kb on - strand at 2.078 kb on + strand at 2.079 kb on - strand at 2.080 kb on + strand at 2.081 kb on - strand at 2.081 kb on - strand at 2.108 kb on + strand at 2.189 kb on + strand at 2.193 kb on + strand at 2.194 kb on - strand at 2.230 kb on - strand at 2.230 kb on - strand at 2.230 kb on - strand at 2.242 kb on + strand at 2.243 kb on - strand at 2.300 kb on - strand at 2.300 kb on - strand at 2.319 kb on - strand at 2.363 kb on - strand at 2.395 kb on - strand at 2.462 kb on + strand at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.677 kb on - strand, within CA264_00015 at 2.699 kb on + strand, within CA264_00015 at 2.699 kb on + strand, within CA264_00015 at 2.742 kb on + strand, within CA264_00015 at 2.853 kb on - strand, within CA264_00015
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.0005 mg/ml remove 1,437 - +0.2 1,496 + -1.0 1,551 - +0.5 1,634 + CA264_00010 0.28 -2.6 1,754 + CA264_00010 0.55 -1.1 1,755 - CA264_00010 0.56 -0.1 1,755 - CA264_00010 0.56 -0.2 1,766 - CA264_00010 0.58 -0.4 1,775 + CA264_00010 0.60 -1.0 1,776 - CA264_00010 0.61 -0.2 1,853 + CA264_00010 0.79 -0.1 1,854 - CA264_00010 0.79 -0.5 1,857 - CA264_00010 0.79 -0.1 1,857 - CA264_00010 0.79 -0.7 1,862 + CA264_00010 0.81 -0.2 1,874 + CA264_00010 0.83 -0.1 1,875 - CA264_00010 0.84 +0.2 1,902 + -0.3 1,903 - +0.1 1,903 - -0.3 1,947 + -1.7 1,979 - -0.5 1,991 - +0.0 2,007 + -0.7 2,008 - +0.1 2,008 - +0.9 2,028 + -0.0 2,028 + -0.9 2,029 - -0.7 2,078 + +0.2 2,079 - -0.6 2,080 + +0.6 2,081 - -0.3 2,081 - +0.2 2,108 + +0.6 2,189 + -1.0 2,193 + -0.0 2,194 - -0.9 2,230 - +0.2 2,230 - +0.5 2,230 - +0.9 2,242 + -0.0 2,243 - -2.1 2,300 - -0.2 2,300 - -0.4 2,319 - +0.1 2,363 - -0.6 2,395 - +1.2 2,462 + +1.5 2,677 - CA264_00015 0.21 +0.7 2,677 - CA264_00015 0.21 -0.6 2,677 - CA264_00015 0.21 +1.5 2,677 - CA264_00015 0.21 -1.0 2,699 + CA264_00015 0.23 -0.6 2,699 + CA264_00015 0.23 +0.3 2,742 + CA264_00015 0.26 +0.5 2,853 - CA264_00015 0.33 +1.3
Or see this region's nucleotide sequence