Experiment: Betaine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6021 and Atu6022 are separated by 607 nucleotides Atu6022 and Atu6023 are separated by 3 nucleotides
Atu6021: Atu6021 - D-nopaline dehydrogenase, at 29,978 to 31,096
Atu6021
Atu6022: Atu6022 - N-methylhydantoinase A/acetone carboxylase, beta subunit, at 31,704 to 33,740
Atu6022
Atu6023: Atu6023 - N-methylhydantoinase B/acetone carboxylase, alpha subunit, at 33,744 to 35,699
Atu6023
Position (kb) 31
32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 30.798 kb on + strand, within Atu6021 at 30.888 kb on + strand, within Atu6021 at 30.891 kb on - strand, within Atu6021 at 30.918 kb on - strand, within Atu6021 at 30.930 kb on + strand, within Atu6021 at 30.930 kb on + strand, within Atu6021 at 30.935 kb on + strand, within Atu6021 at 30.938 kb on - strand, within Atu6021 at 30.942 kb on + strand, within Atu6021 at 30.942 kb on + strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.950 kb on - strand, within Atu6021 at 30.960 kb on - strand, within Atu6021 at 30.982 kb on - strand, within Atu6021 at 31.033 kb on - strand at 31.060 kb on - strand at 31.062 kb on - strand at 31.085 kb on + strand at 31.132 kb on + strand at 31.154 kb on + strand at 31.182 kb on + strand at 31.200 kb on + strand at 31.202 kb on + strand at 31.202 kb on + strand at 31.202 kb on + strand at 31.202 kb on + strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.210 kb on - strand at 31.241 kb on + strand at 31.274 kb on + strand at 31.274 kb on + strand at 31.282 kb on - strand at 31.282 kb on - strand at 31.323 kb on - strand at 31.352 kb on + strand at 31.359 kb on - strand at 31.359 kb on - strand at 31.359 kb on - strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.429 kb on + strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.437 kb on - strand at 31.463 kb on + strand at 31.486 kb on + strand at 31.506 kb on + strand at 31.510 kb on + strand at 31.511 kb on + strand at 31.518 kb on - strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.642 kb on + strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.650 kb on - strand at 31.730 kb on - strand at 31.757 kb on + strand at 31.757 kb on + strand at 31.757 kb on + strand at 31.769 kb on + strand at 31.777 kb on - strand at 31.793 kb on + strand at 31.793 kb on + strand at 31.795 kb on - strand at 31.803 kb on + strand at 31.899 kb on + strand at 31.905 kb on - strand at 31.905 kb on - strand at 31.907 kb on - strand at 31.918 kb on + strand, within Atu6022 at 31.969 kb on + strand, within Atu6022 at 31.972 kb on - strand, within Atu6022 at 31.979 kb on + strand, within Atu6022 at 32.010 kb on + strand, within Atu6022 at 32.010 kb on + strand, within Atu6022 at 32.010 kb on + strand, within Atu6022 at 32.011 kb on + strand, within Atu6022 at 32.018 kb on - strand, within Atu6022 at 32.018 kb on - strand, within Atu6022 at 32.028 kb on + strand, within Atu6022 at 32.068 kb on + strand, within Atu6022 at 32.076 kb on - strand, within Atu6022 at 32.078 kb on - strand, within Atu6022 at 32.094 kb on + strand, within Atu6022 at 32.127 kb on + strand, within Atu6022 at 32.128 kb on - strand, within Atu6022 at 32.194 kb on - strand, within Atu6022 at 32.195 kb on - strand, within Atu6022 at 32.263 kb on + strand, within Atu6022 at 32.271 kb on - strand, within Atu6022 at 32.335 kb on - strand, within Atu6022 at 32.353 kb on - strand, within Atu6022 at 32.368 kb on - strand, within Atu6022 at 32.373 kb on + strand, within Atu6022 at 32.373 kb on + strand, within Atu6022 at 32.420 kb on - strand, within Atu6022 at 32.426 kb on + strand, within Atu6022 at 32.432 kb on - strand, within Atu6022 at 32.462 kb on + strand, within Atu6022 at 32.481 kb on + strand, within Atu6022 at 32.481 kb on - strand, within Atu6022 at 32.489 kb on - strand, within Atu6022 at 32.561 kb on + strand, within Atu6022 at 32.562 kb on + strand, within Atu6022 at 32.578 kb on + strand, within Atu6022 at 32.593 kb on - strand, within Atu6022 at 32.610 kb on + strand, within Atu6022 at 32.618 kb on - strand, within Atu6022 at 32.650 kb on - strand, within Atu6022 at 32.676 kb on - strand, within Atu6022 at 32.738 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.743 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.750 kb on + strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.751 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.758 kb on - strand, within Atu6022 at 32.851 kb on + strand, within Atu6022 at 32.859 kb on - strand, within Atu6022 at 32.916 kb on - strand, within Atu6022 at 32.919 kb on + strand, within Atu6022 at 32.919 kb on + strand, within Atu6022 at 32.927 kb on - strand, within Atu6022 at 32.960 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.979 kb on + strand, within Atu6022 at 32.987 kb on - strand, within Atu6022 at 33.018 kb on + strand, within Atu6022 at 33.027 kb on - strand, within Atu6022 at 33.060 kb on + strand, within Atu6022 at 33.102 kb on - strand, within Atu6022 at 33.114 kb on - strand, within Atu6022 at 33.114 kb on - strand, within Atu6022 at 33.140 kb on - strand, within Atu6022 at 33.158 kb on - strand, within Atu6022 at 33.217 kb on + strand, within Atu6022 at 33.267 kb on + strand, within Atu6022 at 33.309 kb on + strand, within Atu6022 at 33.327 kb on - strand, within Atu6022 at 33.331 kb on + strand, within Atu6022 at 33.411 kb on + strand, within Atu6022 at 33.432 kb on + strand, within Atu6022 at 33.478 kb on - strand, within Atu6022 at 33.487 kb on + strand, within Atu6022 at 33.501 kb on + strand, within Atu6022 at 33.509 kb on - strand, within Atu6022 at 33.517 kb on - strand, within Atu6022 at 33.591 kb on - strand at 33.597 kb on - strand at 33.715 kb on + strand at 33.723 kb on - strand at 33.729 kb on + strand at 33.739 kb on + strand at 33.815 kb on + strand at 33.863 kb on - strand at 33.908 kb on - strand at 33.918 kb on - strand at 33.956 kb on + strand, within Atu6023 at 33.976 kb on + strand, within Atu6023 at 33.977 kb on + strand, within Atu6023 at 34.038 kb on + strand, within Atu6023 at 34.048 kb on + strand, within Atu6023 at 34.048 kb on + strand, within Atu6023 at 34.051 kb on - strand, within Atu6023 at 34.058 kb on + strand, within Atu6023 at 34.058 kb on + strand, within Atu6023 at 34.058 kb on + strand, within Atu6023 at 34.147 kb on + strand, within Atu6023 at 34.160 kb on - strand, within Atu6023 at 34.208 kb on + strand, within Atu6023 at 34.229 kb on - strand, within Atu6023 at 34.277 kb on + strand, within Atu6023 at 34.308 kb on + strand, within Atu6023 at 34.318 kb on + strand, within Atu6023 at 34.389 kb on + strand, within Atu6023 at 34.397 kb on - strand, within Atu6023 at 34.424 kb on + strand, within Atu6023 at 34.424 kb on + strand, within Atu6023 at 34.432 kb on - strand, within Atu6023 at 34.434 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.446 kb on + strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.454 kb on - strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.465 kb on + strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.473 kb on - strand, within Atu6023 at 34.483 kb on - strand, within Atu6023 at 34.518 kb on + strand, within Atu6023 at 34.524 kb on - strand, within Atu6023 at 34.576 kb on + strand, within Atu6023 at 34.584 kb on - strand, within Atu6023 at 34.607 kb on + strand, within Atu6023 at 34.607 kb on + strand, within Atu6023 at 34.607 kb on + strand, within Atu6023 at 34.612 kb on + strand, within Atu6023 at 34.615 kb on - strand, within Atu6023 at 34.615 kb on - strand, within Atu6023 at 34.617 kb on + strand, within Atu6023 at 34.620 kb on - strand, within Atu6023 at 34.620 kb on - strand, within Atu6023 at 34.626 kb on + strand, within Atu6023 at 34.633 kb on + strand, within Atu6023 at 34.633 kb on + strand, within Atu6023 at 34.641 kb on - strand, within Atu6023 at 34.641 kb on - strand, within Atu6023 at 34.679 kb on + strand, within Atu6023 at 34.696 kb on + strand, within Atu6023 at 34.704 kb on - strand, within Atu6023 at 34.724 kb on - strand, within Atu6023 at 34.736 kb on - strand, within Atu6023
Per-strain Table
Position Strand Gene LocusTag Fraction Betaine (N) remove 30,798 + Atu6021 0.73 +0.7 30,888 + Atu6021 0.81 +0.6 30,891 - Atu6021 0.82 -1.5 30,918 - Atu6021 0.84 -1.5 30,930 + Atu6021 0.85 -0.6 30,930 + Atu6021 0.85 +0.9 30,935 + Atu6021 0.86 -2.1 30,938 - Atu6021 0.86 -0.0 30,942 + Atu6021 0.86 +0.1 30,942 + Atu6021 0.86 -1.2 30,950 - Atu6021 0.87 +1.0 30,950 - Atu6021 0.87 +0.8 30,950 - Atu6021 0.87 +1.1 30,950 - Atu6021 0.87 +0.5 30,960 - Atu6021 0.88 +0.2 30,982 - Atu6021 0.90 +0.9 31,033 - -1.0 31,060 - -0.8 31,062 - +3.2 31,085 + -1.6 31,132 + +1.0 31,154 + +0.1 31,182 + +1.6 31,200 + +3.9 31,202 + -0.5 31,202 + +0.1 31,202 + +0.9 31,202 + +1.0 31,210 - +0.7 31,210 - +0.6 31,210 - -0.5 31,210 - +1.0 31,210 - +0.9 31,241 + +0.7 31,274 + +1.9 31,274 + +0.9 31,282 - +1.9 31,282 - +2.9 31,323 - +0.1 31,352 + +0.9 31,359 - +1.0 31,359 - +0.7 31,359 - -0.1 31,429 + +0.7 31,429 + -0.4 31,429 + +0.2 31,429 + +0.2 31,429 + -0.2 31,437 - +0.9 31,437 - +0.6 31,437 - +1.5 31,437 - +2.6 31,437 - +1.3 31,437 - +0.0 31,437 - +0.9 31,437 - -2.3 31,463 + +1.3 31,486 + +0.7 31,506 + +0.3 31,510 + -2.0 31,511 + +0.5 31,518 - -0.8 31,642 + +0.9 31,642 + +0.2 31,642 + +0.2 31,642 + +1.2 31,642 + +0.2 31,642 + -0.6 31,650 - -0.2 31,650 - +0.5 31,650 - +1.1 31,650 - +1.1 31,650 - +0.1 31,730 - +0.0 31,757 + -0.2 31,757 + -0.1 31,757 + -1.0 31,769 + +1.3 31,777 - +0.9 31,793 + +0.7 31,793 + +1.1 31,795 - -0.6 31,803 + +0.2 31,899 + +0.4 31,905 - -0.4 31,905 - +0.3 31,907 - +1.6 31,918 + Atu6022 0.11 -0.1 31,969 + Atu6022 0.13 +1.1 31,972 - Atu6022 0.13 +1.3 31,979 + Atu6022 0.14 -0.4 32,010 + Atu6022 0.15 +0.7 32,010 + Atu6022 0.15 +0.7 32,010 + Atu6022 0.15 +0.9 32,011 + Atu6022 0.15 +0.6 32,018 - Atu6022 0.15 -0.1 32,018 - Atu6022 0.15 +2.3 32,028 + Atu6022 0.16 +0.8 32,068 + Atu6022 0.18 -0.0 32,076 - Atu6022 0.18 +1.8 32,078 - Atu6022 0.18 +0.8 32,094 + Atu6022 0.19 +1.1 32,127 + Atu6022 0.21 +1.4 32,128 - Atu6022 0.21 -0.8 32,194 - Atu6022 0.24 +0.8 32,195 - Atu6022 0.24 +0.6 32,263 + Atu6022 0.27 +1.3 32,271 - Atu6022 0.28 +0.3 32,335 - Atu6022 0.31 +1.1 32,353 - Atu6022 0.32 +2.3 32,368 - Atu6022 0.33 +2.3 32,373 + Atu6022 0.33 +1.6 32,373 + Atu6022 0.33 -0.6 32,420 - Atu6022 0.35 +1.6 32,426 + Atu6022 0.35 +0.6 32,432 - Atu6022 0.36 -0.3 32,462 + Atu6022 0.37 -2.3 32,481 + Atu6022 0.38 +0.5 32,481 - Atu6022 0.38 -0.3 32,489 - Atu6022 0.39 +0.3 32,561 + Atu6022 0.42 +0.8 32,562 + Atu6022 0.42 +0.3 32,578 + Atu6022 0.43 +0.2 32,593 - Atu6022 0.44 +0.8 32,610 + Atu6022 0.44 -0.8 32,618 - Atu6022 0.45 +0.7 32,650 - Atu6022 0.46 +0.6 32,676 - Atu6022 0.48 +2.6 32,738 + Atu6022 0.51 +0.9 32,743 + Atu6022 0.51 +0.7 32,743 + Atu6022 0.51 +1.9 32,743 + Atu6022 0.51 +0.3 32,743 + Atu6022 0.51 +0.3 32,743 + Atu6022 0.51 +2.6 32,743 + Atu6022 0.51 -0.5 32,743 + Atu6022 0.51 +0.7 32,743 + Atu6022 0.51 -0.1 32,750 + Atu6022 0.51 +1.9 32,750 + Atu6022 0.51 +0.2 32,750 + Atu6022 0.51 +1.6 32,750 + Atu6022 0.51 +2.3 32,750 + Atu6022 0.51 +0.4 32,750 + Atu6022 0.51 +0.7 32,750 + Atu6022 0.51 +0.2 32,750 + Atu6022 0.51 +0.0 32,750 + Atu6022 0.51 -1.2 32,750 + Atu6022 0.51 +2.1 32,750 + Atu6022 0.51 +0.5 32,750 + Atu6022 0.51 -0.1 32,750 + Atu6022 0.51 +1.0 32,750 + Atu6022 0.51 +0.2 32,750 + Atu6022 0.51 +0.4 32,751 - Atu6022 0.51 -0.5 32,751 - Atu6022 0.51 +1.1 32,751 - Atu6022 0.51 +0.4 32,751 - Atu6022 0.51 +0.7 32,751 - Atu6022 0.51 +0.5 32,758 - Atu6022 0.52 +1.0 32,758 - Atu6022 0.52 -0.6 32,758 - Atu6022 0.52 -0.0 32,758 - Atu6022 0.52 -0.8 32,758 - Atu6022 0.52 +1.1 32,758 - Atu6022 0.52 +1.9 32,758 - Atu6022 0.52 +0.8 32,758 - Atu6022 0.52 +0.0 32,758 - Atu6022 0.52 +0.7 32,758 - Atu6022 0.52 -0.9 32,851 + Atu6022 0.56 +0.4 32,859 - Atu6022 0.57 +1.6 32,916 - Atu6022 0.59 +0.1 32,919 + Atu6022 0.60 +1.2 32,919 + Atu6022 0.60 +2.1 32,927 - Atu6022 0.60 -1.2 32,960 + Atu6022 0.62 -0.3 32,979 + Atu6022 0.63 +0.9 32,979 + Atu6022 0.63 +0.1 32,979 + Atu6022 0.63 -0.8 32,979 + Atu6022 0.63 +0.4 32,979 + Atu6022 0.63 +1.8 32,979 + Atu6022 0.63 +0.5 32,987 - Atu6022 0.63 +0.2 33,018 + Atu6022 0.65 +2.1 33,027 - Atu6022 0.65 -0.2 33,060 + Atu6022 0.67 -0.1 33,102 - Atu6022 0.69 +0.7 33,114 - Atu6022 0.69 +0.8 33,114 - Atu6022 0.69 -0.5 33,140 - Atu6022 0.70 -0.3 33,158 - Atu6022 0.71 -0.1 33,217 + Atu6022 0.74 +2.3 33,267 + Atu6022 0.77 -0.3 33,309 + Atu6022 0.79 +3.9 33,327 - Atu6022 0.80 +0.6 33,331 + Atu6022 0.80 +0.1 33,411 + Atu6022 0.84 +2.3 33,432 + Atu6022 0.85 -1.0 33,478 - Atu6022 0.87 -0.0 33,487 + Atu6022 0.88 +0.9 33,501 + Atu6022 0.88 +0.3 33,509 - Atu6022 0.89 +1.0 33,517 - Atu6022 0.89 +2.3 33,591 - +0.7 33,597 - +1.7 33,715 + +1.0 33,723 - +1.9 33,729 + +0.7 33,739 + +1.7 33,815 + -0.2 33,863 - -1.4 33,908 - +0.1 33,918 - -0.4 33,956 + Atu6023 0.11 +0.8 33,976 + Atu6023 0.12 +0.1 33,977 + Atu6023 0.12 +2.0 34,038 + Atu6023 0.15 +3.9 34,048 + Atu6023 0.16 -0.2 34,048 + Atu6023 0.16 -1.7 34,051 - Atu6023 0.16 +0.7 34,058 + Atu6023 0.16 +1.1 34,058 + Atu6023 0.16 +1.9 34,058 + Atu6023 0.16 -0.7 34,147 + Atu6023 0.21 +0.4 34,160 - Atu6023 0.21 +1.3 34,208 + Atu6023 0.24 -0.1 34,229 - Atu6023 0.25 -2.2 34,277 + Atu6023 0.27 +0.2 34,308 + Atu6023 0.29 +1.9 34,318 + Atu6023 0.29 -0.5 34,389 + Atu6023 0.33 +0.5 34,397 - Atu6023 0.33 +0.7 34,424 + Atu6023 0.35 -1.1 34,424 + Atu6023 0.35 +0.2 34,432 - Atu6023 0.35 +0.2 34,434 + Atu6023 0.35 +0.7 34,446 + Atu6023 0.36 -0.3 34,446 + Atu6023 0.36 +0.9 34,446 + Atu6023 0.36 +0.2 34,446 + Atu6023 0.36 -0.7 34,446 + Atu6023 0.36 -0.3 34,454 - Atu6023 0.36 -1.4 34,454 - Atu6023 0.36 +0.3 34,454 - Atu6023 0.36 +0.6 34,454 - Atu6023 0.36 +2.3 34,465 + Atu6023 0.37 -0.5 34,465 + Atu6023 0.37 -0.9 34,465 + Atu6023 0.37 +0.1 34,465 + Atu6023 0.37 -0.3 34,465 + Atu6023 0.37 +0.0 34,473 - Atu6023 0.37 -0.5 34,473 - Atu6023 0.37 +2.3 34,473 - Atu6023 0.37 +2.9 34,473 - Atu6023 0.37 +0.6 34,483 - Atu6023 0.38 +0.5 34,518 + Atu6023 0.40 +1.3 34,524 - Atu6023 0.40 +1.3 34,576 + Atu6023 0.43 +0.5 34,584 - Atu6023 0.43 +1.5 34,607 + Atu6023 0.44 +0.2 34,607 + Atu6023 0.44 +0.8 34,607 + Atu6023 0.44 +0.5 34,612 + Atu6023 0.44 +1.6 34,615 - Atu6023 0.45 +1.5 34,615 - Atu6023 0.45 +0.3 34,617 + Atu6023 0.45 +0.8 34,620 - Atu6023 0.45 +0.4 34,620 - Atu6023 0.45 +0.3 34,626 + Atu6023 0.45 +1.1 34,633 + Atu6023 0.45 +0.3 34,633 + Atu6023 0.45 -0.5 34,641 - Atu6023 0.46 -0.6 34,641 - Atu6023 0.46 -0.4 34,679 + Atu6023 0.48 +2.1 34,696 + Atu6023 0.49 +0.5 34,704 - Atu6023 0.49 +0.3 34,724 - Atu6023 0.50 -0.5 34,736 - Atu6023 0.51 +1.6
Or see this region's nucleotide sequence