Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27585 and PS417_27590 are separated by 13 nucleotides PS417_27590 and PS417_27595 are separated by 2 nucleotides PS417_27595 and PS417_27600 overlap by 4 nucleotides PS417_27600 and PS417_27605 are separated by 58 nucleotides
PS417_27585: PS417_27585 - diaminopimelate epimerase, at 5,950,401 to 5,951,231
_27585
PS417_27590: PS417_27590 - hypothetical protein, at 5,951,245 to 5,951,961
_27590
PS417_27595: PS417_27595 - recombinase XerC, at 5,951,964 to 5,952,863
_27595
PS417_27600: PS417_27600 - HAD family hydrolase, at 5,952,860 to 5,953,555
_27600
PS417_27605: PS417_27605 - hypothetical protein, at 5,953,614 to 5,953,940
_27605
Position (kb) 5951
5952
5953 Strain fitness (log2 ratio) -1
0
1
2 at 5951.208 kb on + strand at 5951.243 kb on + strand at 5951.244 kb on - strand at 5951.442 kb on + strand, within PS417_27590 at 5951.442 kb on + strand, within PS417_27590 at 5951.442 kb on + strand, within PS417_27590 at 5951.443 kb on - strand, within PS417_27590 at 5951.445 kb on + strand at 5951.863 kb on + strand, within PS417_27590 at 5951.863 kb on + strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.864 kb on - strand, within PS417_27590 at 5951.896 kb on + strand at 5951.896 kb on + strand at 5951.897 kb on - strand at 5952.384 kb on + strand, within PS417_27595 at 5952.385 kb on - strand, within PS417_27595 at 5952.463 kb on + strand, within PS417_27595 at 5952.464 kb on - strand, within PS417_27595 at 5952.702 kb on - strand, within PS417_27595 at 5952.813 kb on + strand at 5952.865 kb on + strand at 5952.912 kb on + strand at 5953.137 kb on + strand, within PS417_27600 at 5953.137 kb on + strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand at 5953.138 kb on - strand, within PS417_27600 at 5953.138 kb on - strand, within PS417_27600 at 5953.284 kb on - strand, within PS417_27600 at 5953.284 kb on - strand, within PS417_27600 at 5953.418 kb on - strand, within PS417_27600 at 5953.528 kb on - strand at 5953.595 kb on + strand at 5953.619 kb on + strand at 5953.619 kb on + strand at 5953.619 kb on + strand at 5953.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,951,208 + -0.4 5,951,243 + +0.5 5,951,244 - -0.4 5,951,442 + PS417_27590 0.27 +0.4 5,951,442 + PS417_27590 0.27 -0.5 5,951,442 + PS417_27590 0.27 +0.1 5,951,443 - PS417_27590 0.28 +0.2 5,951,445 + +0.9 5,951,863 + PS417_27590 0.86 -1.7 5,951,863 + PS417_27590 0.86 -0.5 5,951,864 - PS417_27590 0.86 -0.2 5,951,864 - PS417_27590 0.86 +0.2 5,951,864 - PS417_27590 0.86 +0.6 5,951,896 + +1.9 5,951,896 + +0.2 5,951,897 - +1.5 5,952,384 + PS417_27595 0.47 -1.6 5,952,385 - PS417_27595 0.47 -1.5 5,952,463 + PS417_27595 0.55 -0.7 5,952,464 - PS417_27595 0.56 -1.0 5,952,702 - PS417_27595 0.82 -0.9 5,952,813 + +0.5 5,952,865 + -0.2 5,952,912 + +0.3 5,953,137 + PS417_27600 0.40 +0.9 5,953,137 + PS417_27600 0.40 +0.5 5,953,138 - PS417_27600 0.40 -0.2 5,953,138 - PS417_27600 0.40 +0.0 5,953,138 - +0.5 5,953,138 - PS417_27600 0.40 -0.2 5,953,138 - PS417_27600 0.40 +0.0 5,953,284 - PS417_27600 0.61 +0.1 5,953,284 - PS417_27600 0.61 -0.4 5,953,418 - PS417_27600 0.80 +0.2 5,953,528 - -0.3 5,953,595 + -0.7 5,953,619 + +0.5 5,953,619 + -0.7 5,953,619 + +0.2 5,953,620 - -0.9
Or see this region's nucleotide sequence