Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26985 and PS417_26990 are separated by 22 nucleotides PS417_26990 and PS417_26995 are separated by 143 nucleotides PS417_26995 and PS417_27000 are separated by 112 nucleotides PS417_27000 and PS417_27005 are separated by 0 nucleotides
PS417_26985: PS417_26985 - phosphoenolpyruvate-protein phosphotransferase, at 5,827,824 to 5,830,103
_26985
PS417_26990: PS417_26990 - RNA pyrophosphohydrolase, at 5,830,126 to 5,830,605
_26990
PS417_26995: PS417_26995 - phosphoserine phosphatase, at 5,830,749 to 5,831,405
_26995
PS417_27000: PS417_27000 - membrane protein, at 5,831,518 to 5,831,985
_27000
PS417_27005: PS417_27005 - membrane protein, at 5,831,986 to 5,832,399
_27005
Position (kb) 5830
5831
5832 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5829.811 kb on + strand, within PS417_26985 at 5829.983 kb on - strand at 5830.031 kb on + strand at 5830.095 kb on - strand at 5830.139 kb on - strand at 5830.221 kb on - strand, within PS417_26990 at 5830.455 kb on - strand, within PS417_26990 at 5830.676 kb on + strand at 5830.676 kb on + strand at 5830.676 kb on + strand at 5830.677 kb on - strand at 5830.681 kb on + strand at 5830.682 kb on - strand at 5830.682 kb on - strand at 5830.706 kb on + strand at 5830.706 kb on + strand at 5830.819 kb on - strand, within PS417_26995 at 5830.986 kb on + strand, within PS417_26995 at 5830.986 kb on + strand, within PS417_26995 at 5830.987 kb on - strand, within PS417_26995 at 5830.987 kb on - strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.988 kb on + strand, within PS417_26995 at 5830.989 kb on - strand, within PS417_26995 at 5830.989 kb on - strand, within PS417_26995 at 5831.271 kb on + strand, within PS417_26995 at 5831.271 kb on + strand, within PS417_26995 at 5831.271 kb on + strand, within PS417_26995 at 5831.272 kb on - strand, within PS417_26995 at 5831.272 kb on - strand, within PS417_26995 at 5831.277 kb on + strand, within PS417_26995 at 5831.277 kb on + strand, within PS417_26995 at 5831.519 kb on + strand at 5831.519 kb on + strand at 5831.523 kb on + strand at 5831.523 kb on + strand at 5831.523 kb on + strand at 5831.523 kb on + strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.524 kb on - strand at 5831.603 kb on + strand, within PS417_27000 at 5831.603 kb on + strand, within PS417_27000 at 5831.718 kb on - strand, within PS417_27000 at 5831.906 kb on + strand, within PS417_27000 at 5831.907 kb on - strand, within PS417_27000 at 5831.952 kb on + strand at 5831.952 kb on + strand at 5831.952 kb on + strand at 5831.953 kb on - strand at 5831.953 kb on - strand at 5831.975 kb on + strand at 5831.976 kb on - strand at 5831.988 kb on - strand at 5832.072 kb on + strand, within PS417_27005
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,829,811 + PS417_26985 0.87 -1.8 5,829,983 - -0.1 5,830,031 + -2.7 5,830,095 - -2.4 5,830,139 - -0.9 5,830,221 - PS417_26990 0.20 -0.5 5,830,455 - PS417_26990 0.69 -1.0 5,830,676 + -0.1 5,830,676 + +0.2 5,830,676 + +0.3 5,830,677 - -0.2 5,830,681 + -0.2 5,830,682 - +1.0 5,830,682 - +1.5 5,830,706 + +0.9 5,830,706 + -0.9 5,830,819 - PS417_26995 0.11 -4.0 5,830,986 + PS417_26995 0.36 -3.8 5,830,986 + PS417_26995 0.36 -3.2 5,830,987 - PS417_26995 0.36 -3.2 5,830,987 - PS417_26995 0.36 -2.4 5,830,988 + PS417_26995 0.36 -2.5 5,830,988 + PS417_26995 0.36 -3.6 5,830,988 + PS417_26995 0.36 -3.2 5,830,988 + PS417_26995 0.36 -3.9 5,830,989 - PS417_26995 0.37 -2.8 5,830,989 - PS417_26995 0.37 -2.0 5,831,271 + PS417_26995 0.79 -0.4 5,831,271 + PS417_26995 0.79 -1.8 5,831,271 + PS417_26995 0.79 -5.2 5,831,272 - PS417_26995 0.80 -3.7 5,831,272 - PS417_26995 0.80 -2.7 5,831,277 + PS417_26995 0.80 -2.3 5,831,277 + PS417_26995 0.80 -1.7 5,831,519 + -0.1 5,831,519 + -0.4 5,831,523 + +0.5 5,831,523 + +0.1 5,831,523 + +0.2 5,831,523 + -0.0 5,831,524 - -1.0 5,831,524 - +0.4 5,831,524 - +0.2 5,831,524 - -1.3 5,831,524 - +0.6 5,831,603 + PS417_27000 0.18 +0.3 5,831,603 + PS417_27000 0.18 +0.9 5,831,718 - PS417_27000 0.43 -0.5 5,831,906 + PS417_27000 0.83 -0.6 5,831,907 - PS417_27000 0.83 +0.1 5,831,952 + +1.5 5,831,952 + +0.2 5,831,952 + -0.1 5,831,953 - -0.1 5,831,953 - +0.6 5,831,975 + -0.1 5,831,976 - +0.2 5,831,988 - -1.0 5,832,072 + PS417_27005 0.21 -0.4
Or see this region's nucleotide sequence