Strain Fitness in Pseudomonas simiae WCS417 around PS417_25805

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25800 and PS417_25805 overlap by 4 nucleotidesPS417_25805 and PS417_25810 overlap by 4 nucleotidesPS417_25810 and PS417_25815 are separated by 97 nucleotides PS417_25800: PS417_25800 - molecular chaperone SurA, at 5,571,530 to 5,572,867 _25800 PS417_25805: PS417_25805 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 5,572,864 to 5,573,853 _25805 PS417_25810: PS417_25810 - ribosomal RNA small subunit methyltransferase A, at 5,573,850 to 5,574,662 _25810 PS417_25815: PS417_25815 - magnesium transporter ApaG, at 5,574,760 to 5,575,140 _25815 Position (kb) 5572 5573 5574Strain fitness (log2 ratio) -1 0 1at 5573.849 kb on + strandat 5574.675 kb on - strandat 5574.675 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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5,573,849 + -1.2
5,574,675 - +0.3
5,574,675 - -0.0

Or see this region's nucleotide sequence