Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23760 and PS417_23765 overlap by 4 nucleotides PS417_23765 and PS417_23770 are separated by 142 nucleotides PS417_23770 and PS417_23775 overlap by 4 nucleotides
PS417_23760: PS417_23760 - DeoR faimly transcriptional regulator, at 5,136,086 to 5,137,348
_23760
PS417_23765: PS417_23765 - hypothetical protein, at 5,137,345 to 5,137,920
_23765
PS417_23770: PS417_23770 - exodeoxyribonuclease V subunit alpha, at 5,138,063 to 5,140,132
_23770
PS417_23775: PS417_23775 - exodeoxyribonuclease V subunit beta, at 5,140,129 to 5,143,803
_23775
Position (kb) 5138
5139
5140
5141 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5137.176 kb on + strand, within PS417_23760 at 5137.176 kb on + strand, within PS417_23760 at 5137.177 kb on - strand, within PS417_23760 at 5137.219 kb on - strand, within PS417_23760 at 5137.400 kb on - strand at 5137.580 kb on + strand, within PS417_23765 at 5137.580 kb on + strand, within PS417_23765 at 5137.581 kb on - strand, within PS417_23765 at 5137.707 kb on + strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.708 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.749 kb on - strand, within PS417_23765 at 5137.867 kb on + strand at 5137.868 kb on - strand at 5137.947 kb on - strand at 5138.049 kb on + strand at 5138.050 kb on - strand at 5138.125 kb on + strand at 5138.126 kb on - strand at 5138.205 kb on + strand at 5138.715 kb on + strand, within PS417_23770 at 5139.694 kb on - strand, within PS417_23770 at 5140.064 kb on + strand at 5140.064 kb on + strand at 5140.132 kb on + strand at 5140.132 kb on + strand at 5140.133 kb on - strand at 5140.996 kb on - strand, within PS417_23775
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 5,137,176 + PS417_23760 0.86 -0.0 5,137,176 + PS417_23760 0.86 -0.1 5,137,177 - PS417_23760 0.86 +0.4 5,137,219 - PS417_23760 0.90 -0.5 5,137,400 - +2.2 5,137,580 + PS417_23765 0.41 -0.0 5,137,580 + PS417_23765 0.41 +1.4 5,137,581 - PS417_23765 0.41 -0.3 5,137,707 + PS417_23765 0.63 -0.9 5,137,708 - PS417_23765 0.63 -0.3 5,137,708 - PS417_23765 0.63 +0.1 5,137,749 - PS417_23765 0.70 +1.2 5,137,749 - PS417_23765 0.70 +0.9 5,137,867 + +0.2 5,137,868 - -0.8 5,137,947 - -0.7 5,138,049 + +1.7 5,138,050 - -0.2 5,138,125 + +0.0 5,138,126 - -0.6 5,138,205 + -1.6 5,138,715 + PS417_23770 0.31 -1.9 5,139,694 - PS417_23770 0.79 -2.9 5,140,064 + -0.2 5,140,064 + -0.6 5,140,132 + -0.9 5,140,132 + -0.8 5,140,133 - +1.0 5,140,996 - PS417_23775 0.24 -2.7
Or see this region's nucleotide sequence