Strain Fitness in Pseudomonas simiae WCS417 around PS417_01575

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_01560 and PS417_01565 overlap by 1 nucleotidesPS417_01565 and PS417_01570 are separated by 0 nucleotidesPS417_01570 and PS417_01575 are separated by 39 nucleotidesPS417_01575 and PS417_01580 are separated by 9 nucleotidesPS417_01580 and PS417_01585 are separated by 66 nucleotides PS417_01560: PS417_01560 - imidazoleglycerol-phosphate dehydratase, at 346,158 to 346,751 _01560 PS417_01565: PS417_01565 - imidazole glycerol phosphate synthase, at 346,751 to 347,389 _01565 PS417_01570: PS417_01570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 347,390 to 347,647 _01570 PS417_01575: PS417_01575 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 347,687 to 348,424 _01575 PS417_01580: PS417_01580 - imidazole glycerol phosphate synthase, at 348,434 to 349,204 _01580 PS417_01585: PS417_01585 - amino acid ABC transporter substrate-binding protein, at 349,271 to 350,026 _01585 Position (kb) 347 348 349Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 346.822 kb on - strand, within PS417_01565at 347.216 kb on + strand, within PS417_01565at 347.216 kb on + strand, within PS417_01565at 347.217 kb on - strand, within PS417_01565at 347.492 kb on - strand, within PS417_01570at 347.558 kb on + strand, within PS417_01570at 347.559 kb on - strand, within PS417_01570at 347.730 kb on + strandat 347.806 kb on - strand, within PS417_01575at 347.964 kb on - strand, within PS417_01575at 347.985 kb on - strand, within PS417_01575at 348.365 kb on + strandat 348.365 kb on + strandat 348.366 kb on - strandat 348.414 kb on - strandat 348.578 kb on - strand, within PS417_01580at 348.578 kb on - strand, within PS417_01580at 349.263 kb on + strandat 349.268 kb on + strandat 349.268 kb on + strandat 349.268 kb on + strandat 349.268 kb on + strandat 349.268 kb on + strandat 349.268 kb on + strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.303 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
346,822 - PS417_01565 0.11 -6.2
347,216 + PS417_01565 0.73 -4.2
347,216 + PS417_01565 0.73 -5.4
347,217 - PS417_01565 0.73 -3.2
347,492 - PS417_01570 0.40 -2.4
347,558 + PS417_01570 0.65 -0.2
347,559 - PS417_01570 0.66 -4.7
347,730 + -3.8
347,806 - PS417_01575 0.16 -5.8
347,964 - PS417_01575 0.38 -7.4
347,985 - PS417_01575 0.40 -3.0
348,365 + -2.8
348,365 + -2.0
348,366 - -3.8
348,414 - -3.1
348,578 - PS417_01580 0.19 -4.8
348,578 - PS417_01580 0.19 -2.1
349,263 + +0.1
349,268 + -0.2
349,268 + +0.0
349,268 + +1.0
349,268 + -0.7
349,268 + +0.3
349,268 + +0.0
349,269 - +0.4
349,269 - -0.0
349,269 - -0.4
349,269 - -0.1
349,269 - -0.3
349,303 + +0.7

Or see this region's nucleotide sequence