Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4498

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4496 and Echvi_4497 overlap by 53 nucleotidesEchvi_4497 and Echvi_4498 are separated by 52 nucleotidesEchvi_4498 and Echvi_4499 are separated by 42 nucleotidesEchvi_4499 and Echvi_4500 are separated by 107 nucleotides Echvi_4496: Echvi_4496 - Short-chain dehydrogenases of various substrate specificities, at 5,374,918 to 5,375,550 _4496 Echvi_4497: Echvi_4497 - hypothetical protein, at 5,375,498 to 5,376,436 _4497 Echvi_4498: Echvi_4498 - hypothetical protein, at 5,376,489 to 5,376,629 _4498 Echvi_4499: Echvi_4499 - Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 5,376,672 to 5,377,511 _4499 Echvi_4500: Echvi_4500 - Predicted membrane protein, at 5,377,619 to 5,378,023 _4500 Position (kb) 5376 5377Strain fitness (log2 ratio) -3 -2 -1 0 1at 5375.585 kb on - strandat 5375.586 kb on + strandat 5375.628 kb on - strand, within Echvi_4497at 5375.628 kb on - strand, within Echvi_4497at 5375.632 kb on + strand, within Echvi_4497at 5375.633 kb on - strand, within Echvi_4497at 5375.633 kb on - strand, within Echvi_4497at 5375.633 kb on - strand, within Echvi_4497at 5375.637 kb on + strand, within Echvi_4497at 5375.637 kb on + strand, within Echvi_4497at 5375.657 kb on + strand, within Echvi_4497at 5375.662 kb on + strand, within Echvi_4497at 5375.738 kb on + strand, within Echvi_4497at 5375.738 kb on + strand, within Echvi_4497at 5375.739 kb on - strand, within Echvi_4497at 5375.739 kb on - strand, within Echvi_4497at 5375.740 kb on + strand, within Echvi_4497at 5375.741 kb on - strand, within Echvi_4497at 5375.773 kb on + strand, within Echvi_4497at 5375.774 kb on - strand, within Echvi_4497at 5375.813 kb on + strand, within Echvi_4497at 5375.864 kb on - strand, within Echvi_4497at 5375.971 kb on + strand, within Echvi_4497at 5375.971 kb on + strandat 5375.971 kb on + strand, within Echvi_4497at 5376.066 kb on - strand, within Echvi_4497at 5376.080 kb on - strand, within Echvi_4497at 5376.080 kb on - strand, within Echvi_4497at 5376.239 kb on - strand, within Echvi_4497at 5376.450 kb on + strandat 5376.496 kb on - strandat 5376.527 kb on + strand, within Echvi_4498at 5376.527 kb on + strand, within Echvi_4498at 5376.527 kb on + strand, within Echvi_4498at 5376.527 kb on + strand, within Echvi_4498at 5376.527 kb on + strand, within Echvi_4498at 5376.527 kb on + strand, within Echvi_4498at 5376.527 kb on + strand, within Echvi_4498at 5376.529 kb on + strand, within Echvi_4498at 5376.529 kb on + strand, within Echvi_4498at 5376.529 kb on + strand, within Echvi_4498at 5376.529 kb on + strand, within Echvi_4498at 5376.563 kb on + strand, within Echvi_4498at 5376.567 kb on + strand, within Echvi_4498at 5376.568 kb on - strand, within Echvi_4498at 5376.693 kb on - strandat 5376.694 kb on + strandat 5376.695 kb on - strandat 5376.695 kb on - strandat 5376.708 kb on - strandat 5376.788 kb on + strand, within Echvi_4499at 5376.833 kb on - strand, within Echvi_4499at 5376.844 kb on + strand, within Echvi_4499at 5376.845 kb on - strand, within Echvi_4499at 5376.853 kb on + strand, within Echvi_4499at 5376.921 kb on + strand, within Echvi_4499at 5376.922 kb on - strand, within Echvi_4499at 5376.923 kb on + strand, within Echvi_4499at 5376.923 kb on + strand, within Echvi_4499at 5376.923 kb on + strand, within Echvi_4499at 5376.923 kb on + strand, within Echvi_4499at 5376.923 kb on + strand, within Echvi_4499at 5376.923 kb on + strand, within Echvi_4499at 5376.924 kb on - strand, within Echvi_4499at 5376.953 kb on - strand, within Echvi_4499at 5376.956 kb on + strand, within Echvi_4499at 5376.956 kb on + strand, within Echvi_4499at 5376.970 kb on + strand, within Echvi_4499at 5377.072 kb on + strand, within Echvi_4499at 5377.073 kb on - strand, within Echvi_4499at 5377.073 kb on - strand, within Echvi_4499at 5377.074 kb on + strand, within Echvi_4499at 5377.074 kb on + strand, within Echvi_4499at 5377.075 kb on - strand, within Echvi_4499at 5377.075 kb on - strand, within Echvi_4499at 5377.075 kb on - strand, within Echvi_4499at 5377.075 kb on - strand, within Echvi_4499at 5377.092 kb on + strand, within Echvi_4499at 5377.092 kb on + strand, within Echvi_4499at 5377.094 kb on + strand, within Echvi_4499at 5377.095 kb on - strand, within Echvi_4499at 5377.251 kb on - strand, within Echvi_4499at 5377.265 kb on - strand, within Echvi_4499at 5377.367 kb on + strand, within Echvi_4499at 5377.395 kb on - strand, within Echvi_4499at 5377.414 kb on + strand, within Echvi_4499at 5377.415 kb on - strand, within Echvi_4499at 5377.426 kb on + strand, within Echvi_4499at 5377.427 kb on - strand, within Echvi_4499at 5377.429 kb on + strandat 5377.429 kb on + strandat 5377.430 kb on - strandat 5377.430 kb on - strandat 5377.430 kb on - strandat 5377.430 kb on - strandat 5377.430 kb on - strandat 5377.515 kb on - strandat 5377.515 kb on - strandat 5377.574 kb on + strandat 5377.574 kb on + strandat 5377.576 kb on + strandat 5377.576 kb on + strandat 5377.577 kb on - strandat 5377.577 kb on - strandat 5377.581 kb on + strandat 5377.581 kb on + strandat 5377.588 kb on - strandat 5377.588 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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5,375,585 - -0.4
5,375,586 + -0.8
5,375,628 - Echvi_4497 0.14 +0.6
5,375,628 - Echvi_4497 0.14 +0.9
5,375,632 + Echvi_4497 0.14 -1.9
5,375,633 - Echvi_4497 0.14 -0.0
5,375,633 - Echvi_4497 0.14 +0.2
5,375,633 - Echvi_4497 0.14 +0.5
5,375,637 + Echvi_4497 0.15 -0.8
5,375,637 + Echvi_4497 0.15 +0.3
5,375,657 + Echvi_4497 0.17 +1.1
5,375,662 + Echvi_4497 0.17 -0.3
5,375,738 + Echvi_4497 0.26 -0.5
5,375,738 + Echvi_4497 0.26 +0.6
5,375,739 - Echvi_4497 0.26 +1.2
5,375,739 - Echvi_4497 0.26 +0.6
5,375,740 + Echvi_4497 0.26 -0.2
5,375,741 - Echvi_4497 0.26 +1.2
5,375,773 + Echvi_4497 0.29 -2.3
5,375,774 - Echvi_4497 0.29 -0.1
5,375,813 + Echvi_4497 0.34 -0.6
5,375,864 - Echvi_4497 0.39 -1.3
5,375,971 + Echvi_4497 0.50 +0.1
5,375,971 + -0.2
5,375,971 + Echvi_4497 0.50 -0.7
5,376,066 - Echvi_4497 0.60 -1.4
5,376,080 - Echvi_4497 0.62 -1.9
5,376,080 - Echvi_4497 0.62 -0.3
5,376,239 - Echvi_4497 0.79 -0.2
5,376,450 + +0.9
5,376,496 - -0.5
5,376,527 + Echvi_4498 0.27 -1.4
5,376,527 + Echvi_4498 0.27 -0.5
5,376,527 + Echvi_4498 0.27 -0.9
5,376,527 + Echvi_4498 0.27 -1.0
5,376,527 + Echvi_4498 0.27 +0.1
5,376,527 + Echvi_4498 0.27 -1.2
5,376,527 + Echvi_4498 0.27 -1.8
5,376,529 + Echvi_4498 0.28 +0.4
5,376,529 + Echvi_4498 0.28 -0.2
5,376,529 + Echvi_4498 0.28 -0.2
5,376,529 + Echvi_4498 0.28 -1.6
5,376,563 + Echvi_4498 0.52 -0.8
5,376,567 + Echvi_4498 0.55 +0.2
5,376,568 - Echvi_4498 0.56 +0.2
5,376,693 - -0.7
5,376,694 + -0.2
5,376,695 - +0.8
5,376,695 - -0.4
5,376,708 - -0.3
5,376,788 + Echvi_4499 0.14 +0.4
5,376,833 - Echvi_4499 0.19 -0.4
5,376,844 + Echvi_4499 0.20 +0.1
5,376,845 - Echvi_4499 0.21 +0.6
5,376,853 + Echvi_4499 0.22 -0.1
5,376,921 + Echvi_4499 0.30 -0.5
5,376,922 - Echvi_4499 0.30 +1.1
5,376,923 + Echvi_4499 0.30 -0.6
5,376,923 + Echvi_4499 0.30 -0.4
5,376,923 + Echvi_4499 0.30 +0.4
5,376,923 + Echvi_4499 0.30 -3.3
5,376,923 + Echvi_4499 0.30 -0.3
5,376,923 + Echvi_4499 0.30 +0.8
5,376,924 - Echvi_4499 0.30 +0.1
5,376,953 - Echvi_4499 0.33 +0.6
5,376,956 + Echvi_4499 0.34 -1.7
5,376,956 + Echvi_4499 0.34 +0.6
5,376,970 + Echvi_4499 0.35 -1.1
5,377,072 + Echvi_4499 0.48 +0.8
5,377,073 - Echvi_4499 0.48 -0.5
5,377,073 - Echvi_4499 0.48 +0.2
5,377,074 + Echvi_4499 0.48 -1.2
5,377,074 + Echvi_4499 0.48 +0.3
5,377,075 - Echvi_4499 0.48 +0.5
5,377,075 - Echvi_4499 0.48 +0.4
5,377,075 - Echvi_4499 0.48 +0.9
5,377,075 - Echvi_4499 0.48 +0.1
5,377,092 + Echvi_4499 0.50 -0.7
5,377,092 + Echvi_4499 0.50 +0.4
5,377,094 + Echvi_4499 0.50 +0.2
5,377,095 - Echvi_4499 0.50 -0.1
5,377,251 - Echvi_4499 0.69 +1.0
5,377,265 - Echvi_4499 0.71 -0.0
5,377,367 + Echvi_4499 0.83 -0.2
5,377,395 - Echvi_4499 0.86 -1.5
5,377,414 + Echvi_4499 0.88 +0.6
5,377,415 - Echvi_4499 0.88 -0.3
5,377,426 + Echvi_4499 0.90 -0.4
5,377,427 - Echvi_4499 0.90 +0.2
5,377,429 + +0.9
5,377,429 + -0.8
5,377,430 - -0.1
5,377,430 - -0.0
5,377,430 - +0.4
5,377,430 - +0.2
5,377,430 - +1.2
5,377,515 - +0.4
5,377,515 - +0.4
5,377,574 + +0.1
5,377,574 + +0.2
5,377,576 + -0.2
5,377,576 + -1.0
5,377,577 - +0.1
5,377,577 - -0.9
5,377,581 + -0.4
5,377,581 + +1.2
5,377,588 - +0.2
5,377,588 - -0.0

Or see this region's nucleotide sequence