Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4496 and Echvi_4497 overlap by 53 nucleotides Echvi_4497 and Echvi_4498 are separated by 52 nucleotides Echvi_4498 and Echvi_4499 are separated by 42 nucleotides Echvi_4499 and Echvi_4500 are separated by 107 nucleotides
Echvi_4496: Echvi_4496 - Short-chain dehydrogenases of various substrate specificities, at 5,374,918 to 5,375,550
_4496
Echvi_4497: Echvi_4497 - hypothetical protein, at 5,375,498 to 5,376,436
_4497
Echvi_4498: Echvi_4498 - hypothetical protein, at 5,376,489 to 5,376,629
_4498
Echvi_4499: Echvi_4499 - Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 5,376,672 to 5,377,511
_4499
Echvi_4500: Echvi_4500 - Predicted membrane protein, at 5,377,619 to 5,378,023
_4500
Position (kb)
5376
5377 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 5375.585 kb on - strand at 5375.586 kb on + strand at 5375.628 kb on - strand, within Echvi_4497 at 5375.628 kb on - strand, within Echvi_4497 at 5375.632 kb on + strand, within Echvi_4497 at 5375.633 kb on - strand, within Echvi_4497 at 5375.633 kb on - strand, within Echvi_4497 at 5375.633 kb on - strand, within Echvi_4497 at 5375.637 kb on + strand, within Echvi_4497 at 5375.637 kb on + strand, within Echvi_4497 at 5375.657 kb on + strand, within Echvi_4497 at 5375.662 kb on + strand, within Echvi_4497 at 5375.738 kb on + strand, within Echvi_4497 at 5375.738 kb on + strand, within Echvi_4497 at 5375.739 kb on - strand, within Echvi_4497 at 5375.739 kb on - strand, within Echvi_4497 at 5375.740 kb on + strand, within Echvi_4497 at 5375.741 kb on - strand, within Echvi_4497 at 5375.773 kb on + strand, within Echvi_4497 at 5375.774 kb on - strand, within Echvi_4497 at 5375.813 kb on + strand, within Echvi_4497 at 5375.864 kb on - strand, within Echvi_4497 at 5375.971 kb on + strand, within Echvi_4497 at 5375.971 kb on + strand at 5375.971 kb on + strand, within Echvi_4497 at 5376.066 kb on - strand, within Echvi_4497 at 5376.080 kb on - strand, within Echvi_4497 at 5376.080 kb on - strand, within Echvi_4497 at 5376.239 kb on - strand, within Echvi_4497 at 5376.450 kb on + strand at 5376.496 kb on - strand at 5376.527 kb on + strand, within Echvi_4498 at 5376.527 kb on + strand, within Echvi_4498 at 5376.527 kb on + strand, within Echvi_4498 at 5376.527 kb on + strand, within Echvi_4498 at 5376.527 kb on + strand, within Echvi_4498 at 5376.527 kb on + strand, within Echvi_4498 at 5376.527 kb on + strand, within Echvi_4498 at 5376.529 kb on + strand, within Echvi_4498 at 5376.529 kb on + strand, within Echvi_4498 at 5376.529 kb on + strand, within Echvi_4498 at 5376.529 kb on + strand, within Echvi_4498 at 5376.563 kb on + strand, within Echvi_4498 at 5376.567 kb on + strand, within Echvi_4498 at 5376.568 kb on - strand, within Echvi_4498 at 5376.693 kb on - strand at 5376.694 kb on + strand at 5376.695 kb on - strand at 5376.695 kb on - strand at 5376.708 kb on - strand at 5376.788 kb on + strand, within Echvi_4499 at 5376.833 kb on - strand, within Echvi_4499 at 5376.844 kb on + strand, within Echvi_4499 at 5376.845 kb on - strand, within Echvi_4499 at 5376.853 kb on + strand, within Echvi_4499 at 5376.921 kb on + strand, within Echvi_4499 at 5376.922 kb on - strand, within Echvi_4499 at 5376.923 kb on + strand, within Echvi_4499 at 5376.923 kb on + strand, within Echvi_4499 at 5376.923 kb on + strand, within Echvi_4499 at 5376.923 kb on + strand, within Echvi_4499 at 5376.923 kb on + strand, within Echvi_4499 at 5376.923 kb on + strand, within Echvi_4499 at 5376.924 kb on - strand, within Echvi_4499 at 5376.953 kb on - strand, within Echvi_4499 at 5376.956 kb on + strand, within Echvi_4499 at 5376.956 kb on + strand, within Echvi_4499 at 5376.970 kb on + strand, within Echvi_4499 at 5377.072 kb on + strand, within Echvi_4499 at 5377.073 kb on - strand, within Echvi_4499 at 5377.073 kb on - strand, within Echvi_4499 at 5377.074 kb on + strand, within Echvi_4499 at 5377.074 kb on + strand, within Echvi_4499 at 5377.075 kb on - strand, within Echvi_4499 at 5377.075 kb on - strand, within Echvi_4499 at 5377.075 kb on - strand, within Echvi_4499 at 5377.075 kb on - strand, within Echvi_4499 at 5377.092 kb on + strand, within Echvi_4499 at 5377.092 kb on + strand, within Echvi_4499 at 5377.094 kb on + strand, within Echvi_4499 at 5377.095 kb on - strand, within Echvi_4499 at 5377.251 kb on - strand, within Echvi_4499 at 5377.265 kb on - strand, within Echvi_4499 at 5377.367 kb on + strand, within Echvi_4499 at 5377.395 kb on - strand, within Echvi_4499 at 5377.414 kb on + strand, within Echvi_4499 at 5377.415 kb on - strand, within Echvi_4499 at 5377.426 kb on + strand, within Echvi_4499 at 5377.427 kb on - strand, within Echvi_4499 at 5377.429 kb on + strand at 5377.429 kb on + strand at 5377.430 kb on - strand at 5377.430 kb on - strand at 5377.430 kb on - strand at 5377.430 kb on - strand at 5377.430 kb on - strand at 5377.515 kb on - strand at 5377.515 kb on - strand at 5377.574 kb on + strand at 5377.574 kb on + strand at 5377.576 kb on + strand at 5377.576 kb on + strand at 5377.577 kb on - strand at 5377.577 kb on - strand at 5377.581 kb on + strand at 5377.581 kb on + strand at 5377.588 kb on - strand at 5377.588 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 5,375,585 - -0.4 5,375,586 + -0.8 5,375,628 - Echvi_4497 0.14 +0.6 5,375,628 - Echvi_4497 0.14 +0.9 5,375,632 + Echvi_4497 0.14 -1.9 5,375,633 - Echvi_4497 0.14 -0.0 5,375,633 - Echvi_4497 0.14 +0.2 5,375,633 - Echvi_4497 0.14 +0.5 5,375,637 + Echvi_4497 0.15 -0.8 5,375,637 + Echvi_4497 0.15 +0.3 5,375,657 + Echvi_4497 0.17 +1.1 5,375,662 + Echvi_4497 0.17 -0.3 5,375,738 + Echvi_4497 0.26 -0.5 5,375,738 + Echvi_4497 0.26 +0.6 5,375,739 - Echvi_4497 0.26 +1.2 5,375,739 - Echvi_4497 0.26 +0.6 5,375,740 + Echvi_4497 0.26 -0.2 5,375,741 - Echvi_4497 0.26 +1.2 5,375,773 + Echvi_4497 0.29 -2.3 5,375,774 - Echvi_4497 0.29 -0.1 5,375,813 + Echvi_4497 0.34 -0.6 5,375,864 - Echvi_4497 0.39 -1.3 5,375,971 + Echvi_4497 0.50 +0.1 5,375,971 + -0.2 5,375,971 + Echvi_4497 0.50 -0.7 5,376,066 - Echvi_4497 0.60 -1.4 5,376,080 - Echvi_4497 0.62 -1.9 5,376,080 - Echvi_4497 0.62 -0.3 5,376,239 - Echvi_4497 0.79 -0.2 5,376,450 + +0.9 5,376,496 - -0.5 5,376,527 + Echvi_4498 0.27 -1.4 5,376,527 + Echvi_4498 0.27 -0.5 5,376,527 + Echvi_4498 0.27 -0.9 5,376,527 + Echvi_4498 0.27 -1.0 5,376,527 + Echvi_4498 0.27 +0.1 5,376,527 + Echvi_4498 0.27 -1.2 5,376,527 + Echvi_4498 0.27 -1.8 5,376,529 + Echvi_4498 0.28 +0.4 5,376,529 + Echvi_4498 0.28 -0.2 5,376,529 + Echvi_4498 0.28 -0.2 5,376,529 + Echvi_4498 0.28 -1.6 5,376,563 + Echvi_4498 0.52 -0.8 5,376,567 + Echvi_4498 0.55 +0.2 5,376,568 - Echvi_4498 0.56 +0.2 5,376,693 - -0.7 5,376,694 + -0.2 5,376,695 - +0.8 5,376,695 - -0.4 5,376,708 - -0.3 5,376,788 + Echvi_4499 0.14 +0.4 5,376,833 - Echvi_4499 0.19 -0.4 5,376,844 + Echvi_4499 0.20 +0.1 5,376,845 - Echvi_4499 0.21 +0.6 5,376,853 + Echvi_4499 0.22 -0.1 5,376,921 + Echvi_4499 0.30 -0.5 5,376,922 - Echvi_4499 0.30 +1.1 5,376,923 + Echvi_4499 0.30 -0.6 5,376,923 + Echvi_4499 0.30 -0.4 5,376,923 + Echvi_4499 0.30 +0.4 5,376,923 + Echvi_4499 0.30 -3.3 5,376,923 + Echvi_4499 0.30 -0.3 5,376,923 + Echvi_4499 0.30 +0.8 5,376,924 - Echvi_4499 0.30 +0.1 5,376,953 - Echvi_4499 0.33 +0.6 5,376,956 + Echvi_4499 0.34 -1.7 5,376,956 + Echvi_4499 0.34 +0.6 5,376,970 + Echvi_4499 0.35 -1.1 5,377,072 + Echvi_4499 0.48 +0.8 5,377,073 - Echvi_4499 0.48 -0.5 5,377,073 - Echvi_4499 0.48 +0.2 5,377,074 + Echvi_4499 0.48 -1.2 5,377,074 + Echvi_4499 0.48 +0.3 5,377,075 - Echvi_4499 0.48 +0.5 5,377,075 - Echvi_4499 0.48 +0.4 5,377,075 - Echvi_4499 0.48 +0.9 5,377,075 - Echvi_4499 0.48 +0.1 5,377,092 + Echvi_4499 0.50 -0.7 5,377,092 + Echvi_4499 0.50 +0.4 5,377,094 + Echvi_4499 0.50 +0.2 5,377,095 - Echvi_4499 0.50 -0.1 5,377,251 - Echvi_4499 0.69 +1.0 5,377,265 - Echvi_4499 0.71 -0.0 5,377,367 + Echvi_4499 0.83 -0.2 5,377,395 - Echvi_4499 0.86 -1.5 5,377,414 + Echvi_4499 0.88 +0.6 5,377,415 - Echvi_4499 0.88 -0.3 5,377,426 + Echvi_4499 0.90 -0.4 5,377,427 - Echvi_4499 0.90 +0.2 5,377,429 + +0.9 5,377,429 + -0.8 5,377,430 - -0.1 5,377,430 - -0.0 5,377,430 - +0.4 5,377,430 - +0.2 5,377,430 - +1.2 5,377,515 - +0.4 5,377,515 - +0.4 5,377,574 + +0.1 5,377,574 + +0.2 5,377,576 + -0.2 5,377,576 + -1.0 5,377,577 - +0.1 5,377,577 - -0.9 5,377,581 + -0.4 5,377,581 + +1.2 5,377,588 - +0.2 5,377,588 - -0.0
Or see this region's nucleotide sequence