Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17480 and CA264_17485 are separated by 118 nucleotides CA264_17485 and CA264_17490 are separated by 158 nucleotides CA264_17490 and CA264_17495 are separated by 156 nucleotides
CA264_17480: CA264_17480 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 4,073,589 to 4,074,635
_17480
CA264_17485: CA264_17485 - cytochrome C biosynthesis protein, at 4,074,754 to 4,075,473
_17485
CA264_17490: CA264_17490 - 6,7-dimethyl-8-ribityllumazine synthase, at 4,075,632 to 4,076,108
_17490
CA264_17495: CA264_17495 - hypothetical protein, at 4,076,265 to 4,076,855
_17495
Position (kb)
4074
4075
4076 Strain fitness (log2 ratio)
-1
0
1 at 4074.061 kb on + strand, within CA264_17480 at 4074.694 kb on + strand at 4074.707 kb on + strand at 4074.707 kb on + strand at 4074.724 kb on + strand at 4074.743 kb on + strand at 4074.743 kb on + strand at 4074.749 kb on + strand at 4075.390 kb on + strand, within CA264_17485 at 4075.427 kb on - strand at 4075.427 kb on - strand at 4075.429 kb on - strand at 4075.472 kb on - strand at 4075.493 kb on + strand at 4075.494 kb on - strand at 4075.494 kb on - strand at 4075.578 kb on - strand at 4075.646 kb on - strand at 4076.136 kb on + strand at 4076.140 kb on + strand at 4076.184 kb on - strand at 4076.364 kb on - strand, within CA264_17495 at 4076.369 kb on + strand, within CA264_17495
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,074,061 + CA264_17480 0.45 -0.3 4,074,694 + +0.5 4,074,707 + -0.8 4,074,707 + -0.4 4,074,724 + +0.9 4,074,743 + +0.3 4,074,743 + +0.0 4,074,749 + -1.3 4,075,390 + CA264_17485 0.88 -0.7 4,075,427 - -0.2 4,075,427 - -0.4 4,075,429 - -0.6 4,075,472 - +0.1 4,075,493 + +0.0 4,075,494 - -1.5 4,075,494 - +0.7 4,075,578 - +0.1 4,075,646 - +0.9 4,076,136 + -0.1 4,076,140 + -1.2 4,076,184 - -1.2 4,076,364 - CA264_17495 0.17 +0.6 4,076,369 + CA264_17495 0.18 -0.0
Or see this region's nucleotide sequence