Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14320

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14310 and CA264_14315 are separated by 189 nucleotidesCA264_14315 and CA264_14320 are separated by 175 nucleotidesCA264_14320 and CA264_14325 are separated by 78 nucleotidesCA264_14325 and CA264_14330 are separated by 262 nucleotides CA264_14310: CA264_14310 - hypothetical protein, at 3,360,826 to 3,361,260 _14310 CA264_14315: CA264_14315 - hypothetical protein, at 3,361,450 to 3,362,004 _14315 CA264_14320: CA264_14320 - tRNA-specific adenosine deaminase, at 3,362,180 to 3,362,593 _14320 CA264_14325: CA264_14325 - superoxide dismutase, at 3,362,672 to 3,363,280 _14325 CA264_14330: CA264_14330 - hypothetical protein, at 3,363,543 to 3,365,882 _14330 Position (kb) 3362 3363Strain fitness (log2 ratio) -2 -1 0 1 2at 3361.200 kb on - strand, within CA264_14310at 3361.247 kb on - strandat 3361.260 kb on + strandat 3361.260 kb on + strandat 3361.261 kb on - strandat 3361.263 kb on + strandat 3361.264 kb on - strandat 3361.298 kb on + strandat 3361.304 kb on + strandat 3361.304 kb on + strandat 3361.348 kb on + strandat 3361.445 kb on + strandat 3361.445 kb on + strandat 3361.446 kb on - strandat 3361.446 kb on - strandat 3361.467 kb on - strandat 3361.572 kb on + strand, within CA264_14315at 3361.572 kb on + strand, within CA264_14315at 3361.572 kb on + strand, within CA264_14315at 3361.659 kb on - strand, within CA264_14315at 3361.665 kb on + strand, within CA264_14315at 3361.767 kb on + strand, within CA264_14315at 3361.891 kb on + strand, within CA264_14315at 3361.891 kb on + strand, within CA264_14315at 3361.915 kb on + strand, within CA264_14315at 3361.924 kb on - strand, within CA264_14315at 3361.995 kb on + strandat 3361.999 kb on - strandat 3362.012 kb on + strandat 3362.012 kb on + strandat 3362.012 kb on + strandat 3362.016 kb on + strandat 3362.016 kb on + strandat 3362.017 kb on - strandat 3362.017 kb on - strandat 3362.017 kb on - strandat 3362.017 kb on - strandat 3362.020 kb on + strandat 3362.021 kb on - strandat 3362.021 kb on - strandat 3362.021 kb on - strandat 3362.024 kb on + strandat 3362.135 kb on - strandat 3362.443 kb on - strand, within CA264_14320at 3362.486 kb on - strand, within CA264_14320at 3362.654 kb on + strandat 3363.296 kb on + strandat 3363.303 kb on + strandat 3363.309 kb on + strandat 3363.309 kb on + strandat 3363.316 kb on + strandat 3363.340 kb on + strandat 3363.340 kb on + strandat 3363.340 kb on + strandat 3363.342 kb on + strandat 3363.388 kb on + strandat 3363.419 kb on + strandat 3363.419 kb on + strandat 3363.419 kb on + strandat 3363.419 kb on + strandat 3363.420 kb on - strandat 3363.420 kb on - strandat 3363.428 kb on + strandat 3363.428 kb on + strandat 3363.429 kb on - strandat 3363.467 kb on - strandat 3363.470 kb on + strandat 3363.471 kb on - strandat 3363.503 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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3,361,200 - CA264_14310 0.86 -0.2
3,361,247 - +0.0
3,361,260 + -0.9
3,361,260 + -0.5
3,361,261 - -0.8
3,361,263 + -1.0
3,361,264 - -0.6
3,361,298 + -0.1
3,361,304 + +0.3
3,361,304 + -0.4
3,361,348 + -0.7
3,361,445 + +1.3
3,361,445 + -0.3
3,361,446 - -0.1
3,361,446 - +0.7
3,361,467 - -0.3
3,361,572 + CA264_14315 0.22 +0.0
3,361,572 + CA264_14315 0.22 -0.2
3,361,572 + CA264_14315 0.22 +1.7
3,361,659 - CA264_14315 0.38 +1.2
3,361,665 + CA264_14315 0.39 +0.8
3,361,767 + CA264_14315 0.57 -0.5
3,361,891 + CA264_14315 0.79 -0.2
3,361,891 + CA264_14315 0.79 -0.8
3,361,915 + CA264_14315 0.84 +1.5
3,361,924 - CA264_14315 0.85 +0.9
3,361,995 + +0.2
3,361,999 - +0.1
3,362,012 + +0.4
3,362,012 + +0.1
3,362,012 + -0.3
3,362,016 + +0.3
3,362,016 + -0.3
3,362,017 - +0.5
3,362,017 - +1.3
3,362,017 - +0.4
3,362,017 - -0.2
3,362,020 + +0.2
3,362,021 - +1.8
3,362,021 - +1.5
3,362,021 - +0.3
3,362,024 + +0.6
3,362,135 - -0.1
3,362,443 - CA264_14320 0.64 -1.9
3,362,486 - CA264_14320 0.74 -2.0
3,362,654 + +0.1
3,363,296 + -0.4
3,363,303 + +0.3
3,363,309 + +0.9
3,363,309 + -1.3
3,363,316 + +0.3
3,363,340 + -0.3
3,363,340 + +0.6
3,363,340 + -0.1
3,363,342 + -0.1
3,363,388 + -1.6
3,363,419 + +0.4
3,363,419 + +1.8
3,363,419 + -0.6
3,363,419 + +2.5
3,363,420 - -0.7
3,363,420 - +0.3
3,363,428 + -0.7
3,363,428 + +0.5
3,363,429 - -0.8
3,363,467 - -0.0
3,363,470 + -1.3
3,363,471 - -0.5
3,363,503 - -0.1

Or see this region's nucleotide sequence