Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14310 and CA264_14315 are separated by 189 nucleotides CA264_14315 and CA264_14320 are separated by 175 nucleotides CA264_14320 and CA264_14325 are separated by 78 nucleotides CA264_14325 and CA264_14330 are separated by 262 nucleotides
CA264_14310: CA264_14310 - hypothetical protein, at 3,360,826 to 3,361,260
_14310
CA264_14315: CA264_14315 - hypothetical protein, at 3,361,450 to 3,362,004
_14315
CA264_14320: CA264_14320 - tRNA-specific adenosine deaminase, at 3,362,180 to 3,362,593
_14320
CA264_14325: CA264_14325 - superoxide dismutase, at 3,362,672 to 3,363,280
_14325
CA264_14330: CA264_14330 - hypothetical protein, at 3,363,543 to 3,365,882
_14330
Position (kb)
3362
3363 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3361.200 kb on - strand, within CA264_14310 at 3361.247 kb on - strand at 3361.260 kb on + strand at 3361.260 kb on + strand at 3361.261 kb on - strand at 3361.263 kb on + strand at 3361.264 kb on - strand at 3361.298 kb on + strand at 3361.304 kb on + strand at 3361.304 kb on + strand at 3361.348 kb on + strand at 3361.445 kb on + strand at 3361.445 kb on + strand at 3361.446 kb on - strand at 3361.446 kb on - strand at 3361.467 kb on - strand at 3361.572 kb on + strand, within CA264_14315 at 3361.572 kb on + strand, within CA264_14315 at 3361.572 kb on + strand, within CA264_14315 at 3361.659 kb on - strand, within CA264_14315 at 3361.665 kb on + strand, within CA264_14315 at 3361.767 kb on + strand, within CA264_14315 at 3361.891 kb on + strand, within CA264_14315 at 3361.891 kb on + strand, within CA264_14315 at 3361.915 kb on + strand, within CA264_14315 at 3361.924 kb on - strand, within CA264_14315 at 3361.995 kb on + strand at 3361.999 kb on - strand at 3362.012 kb on + strand at 3362.012 kb on + strand at 3362.012 kb on + strand at 3362.016 kb on + strand at 3362.016 kb on + strand at 3362.017 kb on - strand at 3362.017 kb on - strand at 3362.017 kb on - strand at 3362.017 kb on - strand at 3362.020 kb on + strand at 3362.021 kb on - strand at 3362.021 kb on - strand at 3362.021 kb on - strand at 3362.024 kb on + strand at 3362.135 kb on - strand at 3362.443 kb on - strand, within CA264_14320 at 3362.486 kb on - strand, within CA264_14320 at 3362.654 kb on + strand at 3363.296 kb on + strand at 3363.303 kb on + strand at 3363.309 kb on + strand at 3363.309 kb on + strand at 3363.316 kb on + strand at 3363.340 kb on + strand at 3363.340 kb on + strand at 3363.340 kb on + strand at 3363.342 kb on + strand at 3363.388 kb on + strand at 3363.419 kb on + strand at 3363.419 kb on + strand at 3363.419 kb on + strand at 3363.419 kb on + strand at 3363.420 kb on - strand at 3363.420 kb on - strand at 3363.428 kb on + strand at 3363.428 kb on + strand at 3363.429 kb on - strand at 3363.467 kb on - strand at 3363.470 kb on + strand at 3363.471 kb on - strand at 3363.503 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 3,361,200 - CA264_14310 0.86 -0.2 3,361,247 - +0.0 3,361,260 + -0.9 3,361,260 + -0.5 3,361,261 - -0.8 3,361,263 + -1.0 3,361,264 - -0.6 3,361,298 + -0.1 3,361,304 + +0.3 3,361,304 + -0.4 3,361,348 + -0.7 3,361,445 + +1.3 3,361,445 + -0.3 3,361,446 - -0.1 3,361,446 - +0.7 3,361,467 - -0.3 3,361,572 + CA264_14315 0.22 +0.0 3,361,572 + CA264_14315 0.22 -0.2 3,361,572 + CA264_14315 0.22 +1.7 3,361,659 - CA264_14315 0.38 +1.2 3,361,665 + CA264_14315 0.39 +0.8 3,361,767 + CA264_14315 0.57 -0.5 3,361,891 + CA264_14315 0.79 -0.2 3,361,891 + CA264_14315 0.79 -0.8 3,361,915 + CA264_14315 0.84 +1.5 3,361,924 - CA264_14315 0.85 +0.9 3,361,995 + +0.2 3,361,999 - +0.1 3,362,012 + +0.4 3,362,012 + +0.1 3,362,012 + -0.3 3,362,016 + +0.3 3,362,016 + -0.3 3,362,017 - +0.5 3,362,017 - +1.3 3,362,017 - +0.4 3,362,017 - -0.2 3,362,020 + +0.2 3,362,021 - +1.8 3,362,021 - +1.5 3,362,021 - +0.3 3,362,024 + +0.6 3,362,135 - -0.1 3,362,443 - CA264_14320 0.64 -1.9 3,362,486 - CA264_14320 0.74 -2.0 3,362,654 + +0.1 3,363,296 + -0.4 3,363,303 + +0.3 3,363,309 + +0.9 3,363,309 + -1.3 3,363,316 + +0.3 3,363,340 + -0.3 3,363,340 + +0.6 3,363,340 + -0.1 3,363,342 + -0.1 3,363,388 + -1.6 3,363,419 + +0.4 3,363,419 + +1.8 3,363,419 + -0.6 3,363,419 + +2.5 3,363,420 - -0.7 3,363,420 - +0.3 3,363,428 + -0.7 3,363,428 + +0.5 3,363,429 - -0.8 3,363,467 - -0.0 3,363,470 + -1.3 3,363,471 - -0.5 3,363,503 - -0.1
Or see this region's nucleotide sequence