Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03265 and CA264_03270 are separated by 330 nucleotides CA264_03270 and CA264_03275 overlap by 14 nucleotides
CA264_03265: CA264_03265 - N-acyl-D-amino acid deacylase, at 768,069 to 769,640
_03265
CA264_03270: CA264_03270 - hypothetical protein, at 769,971 to 770,228
_03270
CA264_03275: CA264_03275 - ribokinase, at 770,215 to 771,165
_03275
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1
2 at 768.982 kb on - strand, within CA264_03265 at 768.984 kb on + strand, within CA264_03265 at 768.985 kb on - strand, within CA264_03265 at 769.003 kb on - strand, within CA264_03265 at 769.022 kb on - strand, within CA264_03265 at 769.025 kb on - strand, within CA264_03265 at 769.036 kb on + strand, within CA264_03265 at 769.037 kb on - strand, within CA264_03265 at 769.037 kb on - strand, within CA264_03265 at 769.364 kb on + strand, within CA264_03265 at 769.365 kb on - strand, within CA264_03265 at 769.386 kb on + strand, within CA264_03265 at 769.386 kb on + strand, within CA264_03265 at 769.405 kb on + strand, within CA264_03265 at 769.494 kb on + strand at 769.495 kb on - strand at 769.512 kb on + strand at 769.525 kb on + strand at 769.530 kb on + strand at 769.648 kb on + strand at 769.648 kb on + strand at 769.649 kb on - strand at 769.651 kb on - strand at 769.667 kb on + strand at 769.668 kb on - strand at 769.680 kb on - strand at 769.680 kb on - strand at 769.686 kb on + strand at 769.735 kb on + strand at 769.736 kb on - strand at 769.736 kb on - strand at 769.736 kb on - strand at 769.752 kb on + strand at 769.755 kb on - strand at 769.835 kb on + strand at 769.873 kb on - strand at 769.877 kb on + strand at 769.877 kb on + strand at 769.877 kb on + strand at 769.877 kb on + strand at 769.877 kb on + strand at 769.877 kb on + strand at 769.878 kb on - strand at 769.878 kb on - strand at 769.879 kb on + strand at 769.879 kb on + strand at 769.880 kb on - strand at 769.880 kb on - strand at 769.880 kb on - strand at 769.914 kb on + strand at 769.925 kb on + strand at 769.946 kb on + strand at 769.946 kb on + strand at 770.039 kb on + strand, within CA264_03270 at 770.039 kb on + strand, within CA264_03270 at 770.132 kb on - strand, within CA264_03270 at 770.169 kb on - strand, within CA264_03270 at 770.188 kb on - strand, within CA264_03270 at 770.200 kb on + strand, within CA264_03270 at 770.201 kb on - strand, within CA264_03270 at 770.204 kb on + strand at 770.224 kb on + strand at 770.225 kb on - strand at 770.295 kb on - strand at 770.442 kb on + strand, within CA264_03275 at 770.442 kb on + strand, within CA264_03275 at 770.442 kb on + strand, within CA264_03275 at 770.442 kb on + strand, within CA264_03275 at 770.610 kb on + strand, within CA264_03275 at 770.626 kb on - strand, within CA264_03275 at 770.627 kb on + strand, within CA264_03275 at 770.627 kb on + strand, within CA264_03275 at 770.627 kb on + strand, within CA264_03275 at 770.631 kb on - strand, within CA264_03275 at 770.746 kb on - strand, within CA264_03275 at 771.012 kb on + strand, within CA264_03275 at 771.118 kb on + strand at 771.119 kb on - strand at 771.119 kb on - strand at 771.148 kb on + strand at 771.149 kb on - strand at 771.167 kb on + strand at 771.167 kb on + strand at 771.167 kb on + strand at 771.168 kb on - strand at 771.168 kb on - strand at 771.168 kb on - strand at 771.173 kb on - strand at 771.180 kb on - strand at 771.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 768,982 - CA264_03265 0.58 -0.6 768,984 + CA264_03265 0.58 -0.1 768,985 - CA264_03265 0.58 +0.3 769,003 - CA264_03265 0.59 +1.8 769,022 - CA264_03265 0.61 +0.7 769,025 - CA264_03265 0.61 -0.2 769,036 + CA264_03265 0.62 -0.1 769,037 - CA264_03265 0.62 -0.6 769,037 - CA264_03265 0.62 -2.1 769,364 + CA264_03265 0.82 +0.3 769,365 - CA264_03265 0.82 +1.4 769,386 + CA264_03265 0.84 +0.1 769,386 + CA264_03265 0.84 -0.7 769,405 + CA264_03265 0.85 -0.8 769,494 + +0.6 769,495 - +0.1 769,512 + -0.2 769,525 + +0.5 769,530 + +0.0 769,648 + +0.3 769,648 + +0.4 769,649 - +0.5 769,651 - -0.3 769,667 + -0.5 769,668 - +0.4 769,680 - +1.8 769,680 - -0.0 769,686 + -0.1 769,735 + -0.2 769,736 - -0.5 769,736 - +0.1 769,736 - -0.1 769,752 + -0.4 769,755 - -0.5 769,835 + +1.1 769,873 - +0.2 769,877 + -0.0 769,877 + -0.5 769,877 + -0.4 769,877 + -0.4 769,877 + +0.4 769,877 + -0.0 769,878 - -0.0 769,878 - +0.4 769,879 + -2.4 769,879 + +1.3 769,880 - +0.4 769,880 - +0.8 769,880 - -0.5 769,914 + -0.8 769,925 + -0.8 769,946 + +0.5 769,946 + -0.3 770,039 + CA264_03270 0.26 +1.9 770,039 + CA264_03270 0.26 +0.1 770,132 - CA264_03270 0.62 +0.3 770,169 - CA264_03270 0.77 -0.1 770,188 - CA264_03270 0.84 -0.8 770,200 + CA264_03270 0.89 +0.4 770,201 - CA264_03270 0.89 -0.5 770,204 + +0.2 770,224 + -0.3 770,225 - -0.4 770,295 - -1.0 770,442 + CA264_03275 0.24 -0.5 770,442 + CA264_03275 0.24 +0.2 770,442 + CA264_03275 0.24 -0.7 770,442 + CA264_03275 0.24 -0.1 770,610 + CA264_03275 0.42 -0.5 770,626 - CA264_03275 0.43 -0.3 770,627 + CA264_03275 0.43 -0.1 770,627 + CA264_03275 0.43 -2.5 770,627 + CA264_03275 0.43 +0.0 770,631 - CA264_03275 0.44 +0.5 770,746 - CA264_03275 0.56 -0.2 771,012 + CA264_03275 0.84 +0.0 771,118 + +0.4 771,119 - -0.4 771,119 - -0.8 771,148 + +0.2 771,149 - +0.1 771,167 + -0.0 771,167 + +1.7 771,167 + -0.4 771,168 - -0.5 771,168 - -0.5 771,168 - +0.5 771,173 - +0.1 771,180 - -0.3 771,180 - +0.3
Or see this region's nucleotide sequence