Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03140

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03135 and CA264_03140 are separated by 416 nucleotidesCA264_03140 and CA264_03145 are separated by 89 nucleotides CA264_03135: CA264_03135 - hydrolase, at 731,710 to 732,537 _03135 CA264_03140: CA264_03140 - hypothetical protein, at 732,954 to 733,835 _03140 CA264_03145: CA264_03145 - cellulose synthase, at 733,925 to 735,706 _03145 Position (kb) 732 733 734Strain fitness (log2 ratio) -2 -1 0 1 2at 732.058 kb on + strand, within CA264_03135at 732.128 kb on - strand, within CA264_03135at 732.293 kb on + strand, within CA264_03135at 732.294 kb on - strand, within CA264_03135at 732.294 kb on - strand, within CA264_03135at 732.308 kb on - strand, within CA264_03135at 732.308 kb on - strand, within CA264_03135at 732.334 kb on + strand, within CA264_03135at 732.401 kb on + strand, within CA264_03135at 732.530 kb on + strandat 732.536 kb on - strandat 732.566 kb on + strandat 732.589 kb on - strandat 732.594 kb on - strandat 732.594 kb on - strandat 732.594 kb on - strandat 732.594 kb on - strandat 732.595 kb on + strandat 732.596 kb on - strandat 732.596 kb on - strandat 732.614 kb on + strandat 732.615 kb on - strandat 732.617 kb on - strandat 732.617 kb on - strandat 732.617 kb on - strandat 732.695 kb on + strandat 732.699 kb on + strandat 732.700 kb on - strandat 732.700 kb on - strandat 732.700 kb on - strandat 732.772 kb on - strandat 732.772 kb on - strandat 732.772 kb on - strandat 732.774 kb on - strandat 732.774 kb on - strandat 732.812 kb on + strandat 732.923 kb on + strandat 732.943 kb on + strandat 732.943 kb on + strandat 732.998 kb on - strandat 732.998 kb on - strandat 733.001 kb on + strandat 733.063 kb on + strand, within CA264_03140at 733.064 kb on - strand, within CA264_03140at 733.090 kb on + strand, within CA264_03140at 733.109 kb on - strand, within CA264_03140at 733.109 kb on - strand, within CA264_03140at 733.121 kb on + strand, within CA264_03140at 733.162 kb on + strand, within CA264_03140at 733.163 kb on - strand, within CA264_03140at 733.184 kb on - strand, within CA264_03140at 733.261 kb on + strand, within CA264_03140at 733.262 kb on - strand, within CA264_03140at 733.427 kb on + strand, within CA264_03140at 733.430 kb on - strand, within CA264_03140at 733.585 kb on + strand, within CA264_03140at 733.612 kb on + strand, within CA264_03140at 733.612 kb on + strand, within CA264_03140at 733.613 kb on - strand, within CA264_03140at 733.613 kb on - strand, within CA264_03140at 733.613 kb on - strand, within CA264_03140at 733.614 kb on + strand, within CA264_03140at 733.614 kb on + strand, within CA264_03140at 733.614 kb on + strand, within CA264_03140at 733.614 kb on + strand, within CA264_03140at 733.614 kb on + strand, within CA264_03140at 733.614 kb on + strand, within CA264_03140at 733.615 kb on - strand, within CA264_03140at 733.615 kb on - strand, within CA264_03140at 733.615 kb on - strand, within CA264_03140at 733.615 kb on - strand, within CA264_03140at 733.616 kb on + strand, within CA264_03140at 733.617 kb on - strand, within CA264_03140at 733.721 kb on - strand, within CA264_03140at 733.721 kb on - strand, within CA264_03140at 733.735 kb on + strand, within CA264_03140at 733.822 kb on + strandat 733.823 kb on - strandat 733.872 kb on + strandat 733.880 kb on + strandat 734.007 kb on - strandat 734.007 kb on - strandat 734.095 kb on - strandat 734.225 kb on + strand, within CA264_03145at 734.228 kb on + strand, within CA264_03145at 734.229 kb on - strand, within CA264_03145at 734.229 kb on - strand, within CA264_03145at 734.272 kb on - strand, within CA264_03145at 734.284 kb on - strand, within CA264_03145at 734.340 kb on - strand, within CA264_03145at 734.340 kb on - strand, within CA264_03145at 734.340 kb on - strand, within CA264_03145at 734.345 kb on + strand, within CA264_03145at 734.433 kb on + strand, within CA264_03145at 734.520 kb on + strand, within CA264_03145at 734.557 kb on + strand, within CA264_03145at 734.558 kb on - strand, within CA264_03145at 734.682 kb on + strand, within CA264_03145at 734.683 kb on - strand, within CA264_03145at 734.683 kb on - strand, within CA264_03145at 734.701 kb on - strand, within CA264_03145at 734.723 kb on - strand, within CA264_03145at 734.803 kb on - strand, within CA264_03145

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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732,058 + CA264_03135 0.42 -0.4
732,128 - CA264_03135 0.50 +0.4
732,293 + CA264_03135 0.70 +0.3
732,294 - CA264_03135 0.71 -0.7
732,294 - CA264_03135 0.71 -0.5
732,308 - CA264_03135 0.72 -0.5
732,308 - CA264_03135 0.72 -0.3
732,334 + CA264_03135 0.75 +0.3
732,401 + CA264_03135 0.83 -0.0
732,530 + +0.9
732,536 - -0.4
732,566 + -1.3
732,589 - +0.4
732,594 - -2.4
732,594 - -1.1
732,594 - +0.3
732,594 - -0.2
732,595 + -1.0
732,596 - +1.3
732,596 - +0.6
732,614 + +0.3
732,615 - +0.2
732,617 - -0.1
732,617 - -0.0
732,617 - +0.5
732,695 + +0.2
732,699 + +1.6
732,700 - -0.6
732,700 - +0.6
732,700 - -0.4
732,772 - +0.6
732,772 - -0.6
732,772 - -0.2
732,774 - +1.0
732,774 - -0.3
732,812 + -1.9
732,923 + -0.2
732,943 + -0.1
732,943 + -0.3
732,998 - -0.3
732,998 - -0.7
733,001 + -0.4
733,063 + CA264_03140 0.12 -0.9
733,064 - CA264_03140 0.12 +1.5
733,090 + CA264_03140 0.15 +1.2
733,109 - CA264_03140 0.18 +0.5
733,109 - CA264_03140 0.18 -0.4
733,121 + CA264_03140 0.19 +0.5
733,162 + CA264_03140 0.24 -0.4
733,163 - CA264_03140 0.24 -0.3
733,184 - CA264_03140 0.26 +0.1
733,261 + CA264_03140 0.35 +0.0
733,262 - CA264_03140 0.35 +0.6
733,427 + CA264_03140 0.54 -0.1
733,430 - CA264_03140 0.54 +0.3
733,585 + CA264_03140 0.72 +0.2
733,612 + CA264_03140 0.75 -0.5
733,612 + CA264_03140 0.75 -0.4
733,613 - CA264_03140 0.75 -0.3
733,613 - CA264_03140 0.75 -0.3
733,613 - CA264_03140 0.75 +0.0
733,614 + CA264_03140 0.75 +0.5
733,614 + CA264_03140 0.75 +0.1
733,614 + CA264_03140 0.75 +0.0
733,614 + CA264_03140 0.75 +0.7
733,614 + CA264_03140 0.75 +0.5
733,614 + CA264_03140 0.75 +1.6
733,615 - CA264_03140 0.75 +0.3
733,615 - CA264_03140 0.75 +1.7
733,615 - CA264_03140 0.75 -1.1
733,615 - CA264_03140 0.75 -0.6
733,616 + CA264_03140 0.75 -0.3
733,617 - CA264_03140 0.75 +2.6
733,721 - CA264_03140 0.87 +0.3
733,721 - CA264_03140 0.87 -0.0
733,735 + CA264_03140 0.89 +0.2
733,822 + -0.6
733,823 - +0.2
733,872 + -0.7
733,880 + +0.3
734,007 - +0.3
734,007 - -0.1
734,095 - -0.1
734,225 + CA264_03145 0.17 +0.5
734,228 + CA264_03145 0.17 -0.2
734,229 - CA264_03145 0.17 -0.2
734,229 - CA264_03145 0.17 +0.8
734,272 - CA264_03145 0.19 +2.3
734,284 - CA264_03145 0.20 -0.0
734,340 - CA264_03145 0.23 -1.2
734,340 - CA264_03145 0.23 +0.6
734,340 - CA264_03145 0.23 -0.1
734,345 + CA264_03145 0.24 +0.3
734,433 + CA264_03145 0.29 +0.9
734,520 + CA264_03145 0.33 +1.1
734,557 + CA264_03145 0.35 -0.5
734,558 - CA264_03145 0.36 -0.6
734,682 + CA264_03145 0.42 +0.1
734,683 - CA264_03145 0.43 +0.6
734,683 - CA264_03145 0.43 -0.3
734,701 - CA264_03145 0.44 -0.4
734,723 - CA264_03145 0.45 -0.4
734,803 - CA264_03145 0.49 -1.8

Or see this region's nucleotide sequence