Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02925 and CA264_02930 are separated by 358 nucleotides CA264_02930 and CA264_02935 are separated by 40 nucleotides CA264_02935 and CA264_02940 are separated by 53 nucleotides CA264_02940 and CA264_02945 are separated by 132 nucleotides
CA264_02925: CA264_02925 - hypothetical protein, at 664,509 to 667,886
_02925
CA264_02930: CA264_02930 - copper-translocating P-type ATPase, at 668,245 to 670,479
_02930
CA264_02935: CA264_02935 - hypothetical protein, at 670,520 to 670,729
_02935
CA264_02940: CA264_02940 - hypothetical protein, at 670,783 to 671,175
_02940
CA264_02945: CA264_02945 - hypothetical protein, at 671,308 to 672,327
_02945
Position (kb) 668
669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 667.280 kb on - strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.414 kb on + strand, within CA264_02925 at 667.449 kb on + strand, within CA264_02925 at 667.475 kb on + strand, within CA264_02925 at 667.476 kb on - strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.477 kb on + strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.478 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.481 kb on - strand, within CA264_02925 at 667.557 kb on + strand at 667.558 kb on - strand at 667.633 kb on + strand at 667.634 kb on - strand at 667.634 kb on - strand at 667.670 kb on + strand at 667.670 kb on + strand at 667.671 kb on - strand at 667.725 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.727 kb on + strand at 667.728 kb on - strand at 667.728 kb on - strand at 667.732 kb on + strand at 667.732 kb on + strand at 667.733 kb on - strand at 667.757 kb on + strand at 667.757 kb on + strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.758 kb on - strand at 667.763 kb on - strand at 667.812 kb on + strand at 667.819 kb on - strand at 667.820 kb on + strand at 667.821 kb on - strand at 667.896 kb on - strand at 667.896 kb on - strand at 667.899 kb on + strand at 667.899 kb on + strand at 667.900 kb on - strand at 667.935 kb on + strand at 667.982 kb on - strand at 668.030 kb on - strand at 668.030 kb on - strand at 668.073 kb on - strand at 668.073 kb on - strand at 668.153 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.160 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.164 kb on + strand at 668.169 kb on - strand at 668.175 kb on - strand at 668.189 kb on + strand at 668.230 kb on + strand at 668.254 kb on - strand at 668.255 kb on + strand at 668.255 kb on + strand at 668.256 kb on - strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.262 kb on + strand at 668.373 kb on - strand at 668.456 kb on + strand at 668.456 kb on + strand at 668.601 kb on + strand, within CA264_02930 at 668.607 kb on + strand, within CA264_02930 at 668.633 kb on + strand, within CA264_02930 at 668.634 kb on - strand, within CA264_02930 at 668.677 kb on - strand, within CA264_02930 at 668.721 kb on + strand, within CA264_02930 at 668.769 kb on + strand, within CA264_02930 at 668.825 kb on - strand, within CA264_02930 at 668.853 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.855 kb on + strand, within CA264_02930 at 668.856 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.866 kb on - strand, within CA264_02930 at 668.895 kb on + strand, within CA264_02930 at 668.895 kb on + strand, within CA264_02930 at 668.895 kb on + strand, within CA264_02930 at 668.934 kb on + strand, within CA264_02930 at 668.976 kb on - strand, within CA264_02930 at 668.991 kb on - strand, within CA264_02930 at 669.127 kb on - strand, within CA264_02930 at 669.133 kb on + strand, within CA264_02930 at 669.213 kb on + strand, within CA264_02930 at 669.214 kb on - strand, within CA264_02930 at 669.216 kb on + strand, within CA264_02930 at 669.216 kb on + strand, within CA264_02930 at 669.217 kb on - strand, within CA264_02930 at 669.319 kb on - strand, within CA264_02930 at 669.356 kb on - strand, within CA264_02930 at 669.374 kb on + strand, within CA264_02930 at 669.378 kb on + strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.379 kb on - strand, within CA264_02930 at 669.381 kb on + strand, within CA264_02930 at 669.440 kb on + strand, within CA264_02930 at 669.441 kb on - strand, within CA264_02930 at 669.441 kb on - strand, within CA264_02930 at 669.446 kb on + strand, within CA264_02930 at 669.446 kb on + strand, within CA264_02930 at 669.519 kb on - strand, within CA264_02930 at 669.530 kb on + strand, within CA264_02930 at 669.531 kb on - strand, within CA264_02930 at 669.676 kb on + strand, within CA264_02930 at 669.676 kb on + strand, within CA264_02930 at 669.685 kb on + strand, within CA264_02930 at 669.726 kb on + strand, within CA264_02930 at 669.727 kb on - strand, within CA264_02930 at 669.776 kb on - strand, within CA264_02930 at 669.776 kb on - strand, within CA264_02930 at 669.931 kb on - strand, within CA264_02930 at 669.986 kb on + strand, within CA264_02930 at 669.988 kb on + strand, within CA264_02930 at 669.988 kb on + strand, within CA264_02930 at 669.988 kb on + strand, within CA264_02930 at 669.989 kb on - strand, within CA264_02930 at 670.040 kb on + strand, within CA264_02930 at 670.121 kb on + strand, within CA264_02930 at 670.178 kb on + strand, within CA264_02930 at 670.178 kb on + strand, within CA264_02930 at 670.179 kb on - strand, within CA264_02930 at 670.179 kb on - strand, within CA264_02930 at 670.182 kb on + strand, within CA264_02930 at 670.182 kb on + strand, within CA264_02930 at 670.182 kb on + strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.183 kb on - strand, within CA264_02930 at 670.185 kb on - strand, within CA264_02930 at 670.264 kb on - strand at 670.653 kb on + strand, within CA264_02935 at 670.727 kb on + strand at 670.739 kb on + strand at 670.739 kb on + strand at 670.740 kb on - strand at 670.740 kb on - strand at 670.741 kb on + strand at 670.741 kb on + strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.745 kb on + strand at 670.745 kb on + strand at 670.745 kb on + strand at 670.746 kb on - strand at 670.754 kb on - strand at 670.779 kb on - strand at 670.822 kb on + strand at 670.880 kb on + strand, within CA264_02940 at 670.880 kb on + strand, within CA264_02940 at 670.915 kb on + strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.991 kb on + strand, within CA264_02940 at 670.991 kb on + strand, within CA264_02940 at 671.053 kb on + strand, within CA264_02940 at 671.054 kb on - strand, within CA264_02940 at 671.073 kb on - strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.109 kb on - strand, within CA264_02940 at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.175 kb on + strand at 671.175 kb on + strand at 671.175 kb on + strand at 671.176 kb on - strand at 671.176 kb on - strand at 671.177 kb on + strand at 671.178 kb on - strand at 671.178 kb on - strand at 671.178 kb on - strand at 671.188 kb on + strand at 671.188 kb on + strand at 671.188 kb on + strand at 671.191 kb on - strand at 671.267 kb on - strand at 671.267 kb on - strand at 671.300 kb on + strand at 671.301 kb on - strand at 671.301 kb on - strand at 671.331 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 667,280 - CA264_02925 0.82 -0.7 667,414 + CA264_02925 0.86 -0.2 667,414 + CA264_02925 0.86 +0.5 667,449 + CA264_02925 0.87 +0.4 667,475 + CA264_02925 0.88 -0.3 667,476 - CA264_02925 0.88 +0.0 667,477 + CA264_02925 0.88 +0.0 667,477 + CA264_02925 0.88 -0.5 667,477 + CA264_02925 0.88 -1.2 667,477 + CA264_02925 0.88 +0.0 667,477 + CA264_02925 0.88 +0.3 667,478 - CA264_02925 0.88 +0.4 667,478 - CA264_02925 0.88 +2.0 667,478 - CA264_02925 0.88 +0.3 667,481 - CA264_02925 0.88 +1.5 667,481 - CA264_02925 0.88 -1.0 667,481 - CA264_02925 0.88 +0.4 667,481 - CA264_02925 0.88 +0.1 667,557 + +0.3 667,558 - -0.1 667,633 + +0.6 667,634 - +0.1 667,634 - +0.3 667,670 + -0.4 667,670 + +0.5 667,671 - +0.1 667,725 + +0.6 667,727 + -0.6 667,727 + +0.0 667,727 + -0.1 667,728 - +0.7 667,728 - -0.0 667,732 + -0.1 667,732 + +1.7 667,733 - -0.4 667,757 + -0.1 667,757 + -0.1 667,758 - -0.2 667,758 - -0.2 667,758 - +0.0 667,758 - +1.1 667,763 - +0.2 667,812 + +0.5 667,819 - +0.3 667,820 + +0.4 667,821 - -0.2 667,896 - -0.2 667,896 - +0.9 667,899 + +0.3 667,899 + -0.1 667,900 - -1.2 667,935 + -0.3 667,982 - +0.3 668,030 - -0.1 668,030 - -0.6 668,073 - -0.4 668,073 - +0.9 668,153 + -1.0 668,160 + -0.0 668,160 + -0.2 668,160 + -0.7 668,160 + +0.6 668,160 + +1.6 668,164 + +0.1 668,164 + +0.2 668,164 + -1.8 668,164 + +0.0 668,169 - -0.2 668,175 - -0.7 668,189 + +0.1 668,230 + -0.1 668,254 - +0.4 668,255 + -0.9 668,255 + -0.4 668,256 - -0.3 668,262 + +0.6 668,262 + -0.2 668,262 + +0.1 668,373 - -0.6 668,456 + +0.5 668,456 + +0.2 668,601 + CA264_02930 0.16 -0.1 668,607 + CA264_02930 0.16 -0.4 668,633 + CA264_02930 0.17 -0.5 668,634 - CA264_02930 0.17 -0.4 668,677 - CA264_02930 0.19 -0.5 668,721 + CA264_02930 0.21 +2.0 668,769 + CA264_02930 0.23 -0.5 668,825 - CA264_02930 0.26 -0.3 668,853 + CA264_02930 0.27 +1.4 668,855 + CA264_02930 0.27 +0.5 668,855 + CA264_02930 0.27 -0.6 668,856 - CA264_02930 0.27 -1.2 668,866 - CA264_02930 0.28 -0.3 668,866 - CA264_02930 0.28 +0.3 668,866 - CA264_02930 0.28 +0.0 668,895 + CA264_02930 0.29 +0.2 668,895 + CA264_02930 0.29 +0.3 668,895 + CA264_02930 0.29 -0.6 668,934 + CA264_02930 0.31 -0.2 668,976 - CA264_02930 0.33 +1.1 668,991 - CA264_02930 0.33 +0.1 669,127 - CA264_02930 0.39 -0.6 669,133 + CA264_02930 0.40 +0.8 669,213 + CA264_02930 0.43 -0.4 669,214 - CA264_02930 0.43 +0.4 669,216 + CA264_02930 0.43 +0.2 669,216 + CA264_02930 0.43 -0.2 669,217 - CA264_02930 0.43 -0.2 669,319 - CA264_02930 0.48 +1.3 669,356 - CA264_02930 0.50 +0.5 669,374 + CA264_02930 0.51 +0.5 669,378 + CA264_02930 0.51 -1.0 669,379 - CA264_02930 0.51 +0.7 669,379 - CA264_02930 0.51 +0.2 669,379 - CA264_02930 0.51 -0.7 669,379 - CA264_02930 0.51 -0.4 669,379 - CA264_02930 0.51 +2.0 669,381 + CA264_02930 0.51 -0.3 669,440 + CA264_02930 0.53 -0.5 669,441 - CA264_02930 0.54 -0.2 669,441 - CA264_02930 0.54 +0.1 669,446 + CA264_02930 0.54 -0.6 669,446 + CA264_02930 0.54 -0.4 669,519 - CA264_02930 0.57 -0.2 669,530 + CA264_02930 0.57 -0.0 669,531 - CA264_02930 0.58 +1.0 669,676 + CA264_02930 0.64 -0.3 669,676 + CA264_02930 0.64 -0.1 669,685 + CA264_02930 0.64 -0.4 669,726 + CA264_02930 0.66 -1.0 669,727 - CA264_02930 0.66 -1.0 669,776 - CA264_02930 0.69 +0.6 669,776 - CA264_02930 0.69 +0.5 669,931 - CA264_02930 0.75 -0.2 669,986 + CA264_02930 0.78 -0.1 669,988 + CA264_02930 0.78 -0.5 669,988 + CA264_02930 0.78 -0.0 669,988 + CA264_02930 0.78 -0.1 669,989 - CA264_02930 0.78 -0.3 670,040 + CA264_02930 0.80 +0.0 670,121 + CA264_02930 0.84 -0.0 670,178 + CA264_02930 0.86 -0.6 670,178 + CA264_02930 0.86 +0.9 670,179 - CA264_02930 0.87 -1.3 670,179 - CA264_02930 0.87 +0.3 670,182 + CA264_02930 0.87 +0.3 670,182 + CA264_02930 0.87 -0.0 670,182 + CA264_02930 0.87 +0.2 670,183 - CA264_02930 0.87 -1.2 670,183 - CA264_02930 0.87 -0.3 670,183 - CA264_02930 0.87 +0.7 670,183 - CA264_02930 0.87 +0.1 670,183 - CA264_02930 0.87 +0.6 670,183 - CA264_02930 0.87 -0.8 670,185 - CA264_02930 0.87 +0.4 670,264 - +0.2 670,653 + CA264_02935 0.63 +0.6 670,727 + +0.4 670,739 + -0.2 670,739 + -0.1 670,740 - -0.2 670,740 - -0.6 670,741 + -1.0 670,741 + +0.1 670,742 - -0.9 670,742 - -1.4 670,742 - -0.3 670,742 - +0.3 670,745 + -0.2 670,745 + -0.3 670,745 + -0.5 670,746 - -0.7 670,754 - -0.6 670,779 - +0.5 670,822 + -0.1 670,880 + CA264_02940 0.25 -1.0 670,880 + CA264_02940 0.25 -0.2 670,915 + CA264_02940 0.34 -1.3 670,916 - CA264_02940 0.34 -0.6 670,916 - CA264_02940 0.34 +1.5 670,916 - CA264_02940 0.34 -0.6 670,973 + CA264_02940 0.48 -0.4 670,973 + CA264_02940 0.48 -0.3 670,973 + CA264_02940 0.48 +0.7 670,973 + CA264_02940 0.48 -0.4 670,973 + CA264_02940 0.48 -0.2 670,973 + CA264_02940 0.48 -0.1 670,974 - CA264_02940 0.49 +0.1 670,974 - CA264_02940 0.49 -0.7 670,974 - CA264_02940 0.49 +0.1 670,974 - CA264_02940 0.49 -0.1 670,974 - CA264_02940 0.49 -0.3 670,974 - CA264_02940 0.49 -0.4 670,974 - CA264_02940 0.49 -0.6 670,991 + CA264_02940 0.53 +0.1 670,991 + CA264_02940 0.53 -0.2 671,053 + CA264_02940 0.69 +0.3 671,054 - CA264_02940 0.69 +1.5 671,073 - CA264_02940 0.74 -0.1 671,108 + CA264_02940 0.83 -0.1 671,108 + CA264_02940 0.83 +0.1 671,108 + CA264_02940 0.83 +0.3 671,109 - CA264_02940 0.83 -0.2 671,143 + -0.2 671,144 - -0.7 671,144 - -0.9 671,144 - +0.8 671,175 + -0.5 671,175 + +0.1 671,175 + -0.0 671,176 - -1.0 671,176 - +0.0 671,177 + +0.2 671,178 - +0.1 671,178 - +0.1 671,178 - +0.3 671,188 + +0.1 671,188 + -0.5 671,188 + -0.0 671,191 - -0.3 671,267 - +0.2 671,267 - -0.5 671,300 + +0.1 671,301 - -0.7 671,301 - -0.0 671,331 + +1.3
Or see this region's nucleotide sequence