Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02890

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02880 and CA264_02885 are separated by 35 nucleotidesCA264_02885 and CA264_02890 are separated by 138 nucleotidesCA264_02890 and CA264_02895 are separated by 188 nucleotides CA264_02880: CA264_02880 - hypothetical protein, at 658,746 to 658,949 _02880 CA264_02885: CA264_02885 - hypothetical protein, at 658,985 to 659,710 _02885 CA264_02890: CA264_02890 - hypothetical protein, at 659,849 to 660,490 _02890 CA264_02895: CA264_02895 - alpha/beta hydrolase, at 660,679 to 661,674 _02895 Position (kb) 659 660 661Strain fitness (log2 ratio) -2 -1 0 1at 658.965 kb on - strandat 658.979 kb on - strandat 658.979 kb on - strandat 658.982 kb on - strandat 659.001 kb on + strandat 659.005 kb on + strandat 659.005 kb on + strandat 659.006 kb on - strandat 659.006 kb on - strandat 659.007 kb on + strandat 659.172 kb on + strand, within CA264_02885at 659.188 kb on + strand, within CA264_02885at 659.189 kb on - strand, within CA264_02885at 659.244 kb on - strand, within CA264_02885at 659.247 kb on + strand, within CA264_02885at 659.247 kb on + strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.248 kb on - strand, within CA264_02885at 659.392 kb on - strand, within CA264_02885at 659.392 kb on - strand, within CA264_02885at 659.410 kb on + strand, within CA264_02885at 659.415 kb on + strand, within CA264_02885at 659.416 kb on - strand, within CA264_02885at 659.416 kb on - strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.417 kb on + strand, within CA264_02885at 659.421 kb on + strand, within CA264_02885at 659.422 kb on - strand, within CA264_02885at 659.474 kb on - strand, within CA264_02885at 659.642 kb on - strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.669 kb on + strandat 659.670 kb on - strandat 659.695 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.709 kb on - strandat 659.842 kb on + strandat 659.843 kb on - strandat 659.843 kb on - strandat 659.846 kb on + strandat 659.847 kb on - strandat 659.847 kb on - strandat 659.850 kb on + strandat 659.863 kb on - strandat 659.944 kb on - strand, within CA264_02890at 659.950 kb on - strand, within CA264_02890at 660.117 kb on - strand, within CA264_02890at 660.159 kb on + strand, within CA264_02890at 660.164 kb on - strand, within CA264_02890at 660.222 kb on + strand, within CA264_02890at 660.253 kb on - strand, within CA264_02890at 660.258 kb on + strand, within CA264_02890at 660.354 kb on - strand, within CA264_02890at 660.395 kb on + strand, within CA264_02890at 660.421 kb on - strand, within CA264_02890at 660.651 kb on + strandat 660.658 kb on - strandat 660.673 kb on + strandat 660.695 kb on + strandat 660.720 kb on - strandat 660.844 kb on + strand, within CA264_02895at 660.844 kb on + strand, within CA264_02895at 660.845 kb on - strand, within CA264_02895at 660.926 kb on - strand, within CA264_02895at 660.990 kb on - strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.019 kb on + strand, within CA264_02895at 661.020 kb on - strand, within CA264_02895at 661.020 kb on - strand, within CA264_02895at 661.021 kb on + strand, within CA264_02895at 661.021 kb on + strand, within CA264_02895at 661.022 kb on - strand, within CA264_02895at 661.024 kb on + strand, within CA264_02895at 661.024 kb on + strand, within CA264_02895at 661.126 kb on - strand, within CA264_02895at 661.199 kb on - strand, within CA264_02895at 661.216 kb on + strand, within CA264_02895at 661.217 kb on - strand, within CA264_02895at 661.237 kb on + strand, within CA264_02895at 661.237 kb on + strand, within CA264_02895at 661.291 kb on + strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.295 kb on - strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.396 kb on + strand, within CA264_02895at 661.426 kb on + strand, within CA264_02895at 661.442 kb on + strand, within CA264_02895at 661.443 kb on - strand, within CA264_02895at 661.467 kb on - strand, within CA264_02895

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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658,965 - -0.2
658,979 - +0.0
658,979 - -0.1
658,982 - -0.4
659,001 + +0.7
659,005 + -0.1
659,005 + +0.7
659,006 - -0.5
659,006 - +0.9
659,007 + -0.0
659,172 + CA264_02885 0.26 -0.4
659,188 + CA264_02885 0.28 +0.1
659,189 - CA264_02885 0.28 -0.5
659,244 - CA264_02885 0.36 -0.0
659,247 + CA264_02885 0.36 +0.7
659,247 + CA264_02885 0.36 -0.7
659,248 - CA264_02885 0.36 -0.0
659,248 - CA264_02885 0.36 +0.7
659,248 - CA264_02885 0.36 +0.0
659,248 - CA264_02885 0.36 -1.8
659,248 - CA264_02885 0.36 +0.3
659,392 - CA264_02885 0.56 +0.3
659,392 - CA264_02885 0.56 -0.2
659,410 + CA264_02885 0.59 +0.0
659,415 + CA264_02885 0.59 -2.3
659,416 - CA264_02885 0.59 +0.3
659,416 - CA264_02885 0.59 +0.2
659,417 + CA264_02885 0.60 -0.4
659,417 + CA264_02885 0.60 -0.2
659,417 + CA264_02885 0.60 +0.1
659,421 + CA264_02885 0.60 -0.1
659,422 - CA264_02885 0.60 +0.8
659,474 - CA264_02885 0.67 -0.2
659,642 - +0.3
659,669 + -0.8
659,669 + -2.1
659,669 + +0.7
659,669 + -0.2
659,670 - -0.1
659,695 - +0.5
659,709 - +0.9
659,709 - -0.2
659,709 - -0.3
659,842 + +0.2
659,843 - -1.5
659,843 - -1.0
659,846 + +1.6
659,847 - -0.1
659,847 - +1.1
659,850 + +1.0
659,863 - +0.1
659,944 - CA264_02890 0.15 -0.0
659,950 - CA264_02890 0.16 +0.6
660,117 - CA264_02890 0.42 -1.5
660,159 + CA264_02890 0.48 -0.1
660,164 - CA264_02890 0.49 -2.2
660,222 + CA264_02890 0.58 -0.2
660,253 - CA264_02890 0.63 +0.6
660,258 + CA264_02890 0.64 +0.2
660,354 - CA264_02890 0.79 +0.8
660,395 + CA264_02890 0.85 +0.3
660,421 - CA264_02890 0.89 +0.2
660,651 + +0.2
660,658 - -0.3
660,673 + -1.0
660,695 + -0.2
660,720 - -0.4
660,844 + CA264_02895 0.17 +0.8
660,844 + CA264_02895 0.17 +1.7
660,845 - CA264_02895 0.17 -0.1
660,926 - CA264_02895 0.25 +0.7
660,990 - CA264_02895 0.31 -0.2
661,019 + CA264_02895 0.34 +0.2
661,019 + CA264_02895 0.34 -0.4
661,019 + CA264_02895 0.34 -0.4
661,020 - CA264_02895 0.34 -0.5
661,020 - CA264_02895 0.34 +1.6
661,021 + CA264_02895 0.34 +0.3
661,021 + CA264_02895 0.34 +0.4
661,022 - CA264_02895 0.34 -0.3
661,024 + CA264_02895 0.35 -1.1
661,024 + CA264_02895 0.35 +0.5
661,126 - CA264_02895 0.45 +0.1
661,199 - CA264_02895 0.52 -1.1
661,216 + CA264_02895 0.54 -0.7
661,217 - CA264_02895 0.54 -1.0
661,237 + CA264_02895 0.56 +0.1
661,237 + CA264_02895 0.56 +0.4
661,291 + CA264_02895 0.61 +0.1
661,295 - CA264_02895 0.62 +0.1
661,295 - CA264_02895 0.62 +0.5
661,295 - CA264_02895 0.62 +0.3
661,396 + CA264_02895 0.72 -0.1
661,396 + CA264_02895 0.72 -0.5
661,396 + CA264_02895 0.72 -0.4
661,426 + CA264_02895 0.75 +0.7
661,442 + CA264_02895 0.77 +1.1
661,443 - CA264_02895 0.77 -0.4
661,467 - CA264_02895 0.79 -0.1

Or see this region's nucleotide sequence