Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02815

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02810 and CA264_02815 are separated by 87 nucleotidesCA264_02815 and CA264_02820 are separated by 84 nucleotidesCA264_02820 and CA264_02825 are separated by 72 nucleotides CA264_02810: CA264_02810 - thrombospondin type 3 repeat-containing protein, at 646,212 to 646,859 _02810 CA264_02815: CA264_02815 - ketoacyl reductase, at 646,947 to 647,966 _02815 CA264_02820: CA264_02820 - GDP-mannose pyrophosphatase, at 648,051 to 648,572 _02820 CA264_02825: CA264_02825 - hypothetical protein, at 648,645 to 649,355 _02825 Position (kb) 646 647 648Strain fitness (log2 ratio) -2 -1 0 1 2at 645.990 kb on + strandat 645.991 kb on - strandat 645.992 kb on + strandat 645.993 kb on - strandat 645.998 kb on + strandat 645.999 kb on - strandat 645.999 kb on - strandat 645.999 kb on - strandat 646.034 kb on - strandat 646.038 kb on + strandat 646.109 kb on - strandat 646.124 kb on + strandat 646.125 kb on - strandat 646.126 kb on + strandat 646.126 kb on + strandat 646.126 kb on + strandat 646.127 kb on - strandat 646.127 kb on - strandat 646.161 kb on + strandat 646.162 kb on - strandat 646.235 kb on + strandat 646.256 kb on + strandat 646.297 kb on + strand, within CA264_02810at 646.315 kb on - strand, within CA264_02810at 646.356 kb on + strand, within CA264_02810at 646.486 kb on - strand, within CA264_02810at 646.519 kb on - strand, within CA264_02810at 646.545 kb on + strand, within CA264_02810at 646.548 kb on + strand, within CA264_02810at 646.548 kb on + strand, within CA264_02810at 646.549 kb on - strand, within CA264_02810at 646.602 kb on + strand, within CA264_02810at 646.603 kb on - strand, within CA264_02810at 646.621 kb on - strand, within CA264_02810at 646.708 kb on - strand, within CA264_02810at 646.708 kb on - strand, within CA264_02810at 646.857 kb on + strandat 646.862 kb on - strandat 646.862 kb on - strandat 646.862 kb on - strandat 646.864 kb on - strandat 646.896 kb on + strandat 646.896 kb on + strandat 646.913 kb on - strandat 646.927 kb on + strandat 646.958 kb on + strandat 646.958 kb on + strandat 646.967 kb on + strandat 646.968 kb on - strandat 647.060 kb on - strand, within CA264_02815at 647.098 kb on + strand, within CA264_02815at 647.153 kb on + strand, within CA264_02815at 647.154 kb on - strand, within CA264_02815at 647.202 kb on - strand, within CA264_02815at 647.227 kb on + strand, within CA264_02815at 647.246 kb on - strand, within CA264_02815at 647.380 kb on - strand, within CA264_02815at 647.392 kb on + strand, within CA264_02815at 647.392 kb on + strand, within CA264_02815at 647.393 kb on - strand, within CA264_02815at 647.393 kb on - strand, within CA264_02815at 647.393 kb on - strand, within CA264_02815at 647.444 kb on + strand, within CA264_02815at 647.476 kb on + strand, within CA264_02815at 647.476 kb on + strand, within CA264_02815at 647.477 kb on - strand, within CA264_02815at 647.500 kb on - strand, within CA264_02815at 647.562 kb on + strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.563 kb on - strand, within CA264_02815at 647.565 kb on - strand, within CA264_02815at 647.565 kb on - strand, within CA264_02815at 647.565 kb on - strand, within CA264_02815at 647.576 kb on - strand, within CA264_02815at 647.576 kb on - strand, within CA264_02815at 647.576 kb on - strand, within CA264_02815at 647.609 kb on + strand, within CA264_02815at 647.653 kb on - strand, within CA264_02815at 647.723 kb on - strand, within CA264_02815at 647.815 kb on + strand, within CA264_02815at 647.816 kb on - strand, within CA264_02815at 647.933 kb on + strandat 647.934 kb on - strandat 647.972 kb on + strandat 647.973 kb on - strandat 647.974 kb on + strandat 648.048 kb on + strandat 648.049 kb on - strandat 648.049 kb on - strandat 648.049 kb on - strandat 648.099 kb on + strandat 648.101 kb on + strandat 648.296 kb on + strand, within CA264_02820at 648.297 kb on - strand, within CA264_02820at 648.297 kb on - strand, within CA264_02820at 648.297 kb on - strand, within CA264_02820at 648.298 kb on + strand, within CA264_02820at 648.310 kb on + strand, within CA264_02820at 648.310 kb on + strand, within CA264_02820at 648.311 kb on - strand, within CA264_02820at 648.311 kb on - strand, within CA264_02820at 648.356 kb on + strand, within CA264_02820at 648.357 kb on - strand, within CA264_02820at 648.357 kb on - strand, within CA264_02820at 648.402 kb on + strand, within CA264_02820at 648.403 kb on - strand, within CA264_02820at 648.403 kb on - strand, within CA264_02820at 648.571 kb on - strandat 648.571 kb on - strandat 648.573 kb on + strandat 648.595 kb on + strandat 648.595 kb on + strandat 648.598 kb on + strandat 648.604 kb on + strandat 648.610 kb on - strandat 648.633 kb on - strandat 648.647 kb on - strandat 648.647 kb on - strandat 648.729 kb on - strand, within CA264_02825at 648.791 kb on - strand, within CA264_02825at 648.791 kb on - strand, within CA264_02825at 648.791 kb on - strand, within CA264_02825at 648.801 kb on + strand, within CA264_02825at 648.802 kb on - strand, within CA264_02825at 648.802 kb on - strand, within CA264_02825at 648.805 kb on + strand, within CA264_02825at 648.805 kb on + strand, within CA264_02825at 648.805 kb on + strand, within CA264_02825at 648.806 kb on - strand, within CA264_02825at 648.806 kb on - strand, within CA264_02825at 648.921 kb on + strand, within CA264_02825

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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645,990 + +0.5
645,991 - -0.4
645,992 + +0.6
645,993 - -0.7
645,998 + -0.1
645,999 - -0.2
645,999 - +0.5
645,999 - -0.6
646,034 - -0.1
646,038 + -0.7
646,109 - -1.2
646,124 + -0.3
646,125 - +0.2
646,126 + +0.0
646,126 + +1.1
646,126 + -0.1
646,127 - -0.2
646,127 - +0.5
646,161 + -0.5
646,162 - -0.6
646,235 + -0.4
646,256 + +0.3
646,297 + CA264_02810 0.13 -0.5
646,315 - CA264_02810 0.16 -0.3
646,356 + CA264_02810 0.22 -0.5
646,486 - CA264_02810 0.42 -0.7
646,519 - CA264_02810 0.47 -0.3
646,545 + CA264_02810 0.51 +0.1
646,548 + CA264_02810 0.52 -0.7
646,548 + CA264_02810 0.52 -0.4
646,549 - CA264_02810 0.52 -0.3
646,602 + CA264_02810 0.60 -0.2
646,603 - CA264_02810 0.60 -0.6
646,621 - CA264_02810 0.63 -0.2
646,708 - CA264_02810 0.77 -0.9
646,708 - CA264_02810 0.77 -0.3
646,857 + -0.6
646,862 - -1.0
646,862 - -0.9
646,862 - +0.1
646,864 - -0.3
646,896 + -1.0
646,896 + -0.4
646,913 - +0.1
646,927 + -0.3
646,958 + -0.2
646,958 + +0.1
646,967 + +0.1
646,968 - +0.0
647,060 - CA264_02815 0.11 +0.2
647,098 + CA264_02815 0.15 +0.3
647,153 + CA264_02815 0.20 -0.1
647,154 - CA264_02815 0.20 -1.4
647,202 - CA264_02815 0.25 -0.3
647,227 + CA264_02815 0.27 -0.4
647,246 - CA264_02815 0.29 +0.2
647,380 - CA264_02815 0.42 -0.1
647,392 + CA264_02815 0.44 +0.3
647,392 + CA264_02815 0.44 +1.0
647,393 - CA264_02815 0.44 -0.5
647,393 - CA264_02815 0.44 +1.2
647,393 - CA264_02815 0.44 -0.7
647,444 + CA264_02815 0.49 +0.2
647,476 + CA264_02815 0.52 -0.2
647,476 + CA264_02815 0.52 +0.3
647,477 - CA264_02815 0.52 +0.8
647,500 - CA264_02815 0.54 +0.3
647,562 + CA264_02815 0.60 -0.3
647,563 - CA264_02815 0.60 +0.0
647,563 - CA264_02815 0.60 -0.4
647,563 - CA264_02815 0.60 -0.0
647,563 - CA264_02815 0.60 +0.9
647,565 - CA264_02815 0.61 +0.1
647,565 - CA264_02815 0.61 -0.4
647,565 - CA264_02815 0.61 +0.8
647,576 - CA264_02815 0.62 +0.1
647,576 - CA264_02815 0.62 +0.3
647,576 - CA264_02815 0.62 +0.0
647,609 + CA264_02815 0.65 +0.2
647,653 - CA264_02815 0.69 +1.5
647,723 - CA264_02815 0.76 +1.8
647,815 + CA264_02815 0.85 +0.1
647,816 - CA264_02815 0.85 +0.6
647,933 + +0.6
647,934 - -0.7
647,972 + -0.1
647,973 - +1.2
647,974 + -0.4
648,048 + +0.4
648,049 - -0.7
648,049 - +0.1
648,049 - +0.3
648,099 + -1.3
648,101 + -0.7
648,296 + CA264_02820 0.47 -0.0
648,297 - CA264_02820 0.47 -1.3
648,297 - CA264_02820 0.47 -0.1
648,297 - CA264_02820 0.47 -1.2
648,298 + CA264_02820 0.47 +0.8
648,310 + CA264_02820 0.50 +0.6
648,310 + CA264_02820 0.50 +0.3
648,311 - CA264_02820 0.50 +0.1
648,311 - CA264_02820 0.50 -1.3
648,356 + CA264_02820 0.58 +0.7
648,357 - CA264_02820 0.59 -0.5
648,357 - CA264_02820 0.59 +1.2
648,402 + CA264_02820 0.67 -0.1
648,403 - CA264_02820 0.67 -0.5
648,403 - CA264_02820 0.67 +0.3
648,571 - -0.2
648,571 - +0.4
648,573 + -0.0
648,595 + +0.0
648,595 + -0.4
648,598 + -0.0
648,604 + -0.4
648,610 - -0.5
648,633 - +0.8
648,647 - -0.5
648,647 - -0.4
648,729 - CA264_02825 0.12 -0.0
648,791 - CA264_02825 0.21 -0.0
648,791 - CA264_02825 0.21 -0.0
648,791 - CA264_02825 0.21 -1.2
648,801 + CA264_02825 0.22 -0.2
648,802 - CA264_02825 0.22 -0.8
648,802 - CA264_02825 0.22 -0.7
648,805 + CA264_02825 0.23 -0.0
648,805 + CA264_02825 0.23 -0.8
648,805 + CA264_02825 0.23 -0.5
648,806 - CA264_02825 0.23 +0.2
648,806 - CA264_02825 0.23 -1.9
648,921 + CA264_02825 0.39 +0.3

Or see this region's nucleotide sequence