Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02400 and CA264_02405 are separated by 614 nucleotides CA264_02405 and CA264_02410 are separated by 120 nucleotides
CA264_02400: CA264_02400 - T9SS C-terminal target domain-containing protein, at 555,103 to 559,530
_02400
CA264_02405: CA264_02405 - beta-ketoacyl-ACP reductase, at 560,145 to 561,341
_02405
CA264_02410: CA264_02410 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 561,462 to 562,778
_02410
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 559.182 kb on - strand at 559.293 kb on + strand at 559.293 kb on + strand at 559.293 kb on + strand at 559.294 kb on - strand at 559.294 kb on - strand at 559.328 kb on + strand at 559.378 kb on + strand at 559.379 kb on - strand at 559.382 kb on + strand at 559.383 kb on - strand at 559.441 kb on - strand at 559.441 kb on - strand at 559.441 kb on - strand at 559.495 kb on + strand at 559.504 kb on + strand at 559.505 kb on - strand at 559.515 kb on - strand at 559.530 kb on + strand at 559.539 kb on - strand at 559.562 kb on - strand at 559.562 kb on - strand at 559.564 kb on - strand at 559.593 kb on + strand at 559.607 kb on + strand at 559.608 kb on - strand at 559.622 kb on - strand at 559.652 kb on - strand at 559.658 kb on - strand at 559.681 kb on + strand at 559.704 kb on + strand at 559.708 kb on - strand at 559.708 kb on - strand at 559.731 kb on + strand at 559.731 kb on + strand at 559.732 kb on - strand at 559.734 kb on + strand at 559.734 kb on + strand at 559.735 kb on - strand at 559.735 kb on - strand at 559.740 kb on + strand at 559.740 kb on + strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.741 kb on - strand at 559.742 kb on + strand at 559.743 kb on - strand at 559.746 kb on - strand at 559.755 kb on + strand at 559.772 kb on - strand at 559.785 kb on - strand at 559.793 kb on - strand at 559.846 kb on + strand at 559.847 kb on - strand at 559.876 kb on + strand at 560.014 kb on - strand at 560.083 kb on + strand at 560.203 kb on - strand at 560.203 kb on - strand at 560.270 kb on - strand, within CA264_02405 at 560.270 kb on - strand, within CA264_02405 at 560.292 kb on + strand, within CA264_02405 at 560.293 kb on - strand, within CA264_02405 at 560.299 kb on + strand, within CA264_02405 at 560.351 kb on + strand, within CA264_02405 at 560.351 kb on + strand, within CA264_02405 at 560.351 kb on + strand, within CA264_02405 at 560.352 kb on - strand, within CA264_02405 at 560.646 kb on + strand, within CA264_02405 at 560.646 kb on + strand, within CA264_02405 at 560.651 kb on + strand, within CA264_02405 at 560.652 kb on - strand, within CA264_02405 at 560.652 kb on - strand, within CA264_02405 at 560.693 kb on - strand, within CA264_02405 at 560.716 kb on + strand, within CA264_02405 at 560.855 kb on + strand, within CA264_02405 at 560.914 kb on - strand, within CA264_02405 at 560.957 kb on + strand, within CA264_02405 at 560.958 kb on - strand, within CA264_02405 at 560.977 kb on + strand, within CA264_02405 at 560.977 kb on + strand, within CA264_02405 at 560.978 kb on - strand, within CA264_02405 at 561.018 kb on + strand, within CA264_02405 at 561.019 kb on - strand, within CA264_02405 at 561.019 kb on - strand, within CA264_02405 at 561.162 kb on + strand, within CA264_02405 at 561.163 kb on - strand, within CA264_02405 at 561.321 kb on - strand at 561.357 kb on - strand at 561.363 kb on + strand at 561.364 kb on - strand at 561.364 kb on - strand at 561.364 kb on - strand at 561.430 kb on + strand at 561.432 kb on + strand at 561.433 kb on - strand at 561.433 kb on - strand at 561.437 kb on + strand at 561.437 kb on + strand at 561.438 kb on - strand at 561.545 kb on - strand at 561.545 kb on - strand at 561.577 kb on + strand at 561.587 kb on + strand at 561.588 kb on - strand at 561.593 kb on - strand at 561.593 kb on - strand at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.596 kb on + strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.597 kb on - strand, within CA264_02410 at 561.674 kb on - strand, within CA264_02410 at 561.711 kb on - strand, within CA264_02410 at 561.756 kb on - strand, within CA264_02410 at 561.795 kb on + strand, within CA264_02410 at 561.797 kb on + strand, within CA264_02410 at 561.798 kb on - strand, within CA264_02410 at 561.798 kb on - strand, within CA264_02410 at 561.866 kb on + strand, within CA264_02410 at 561.875 kb on - strand, within CA264_02410 at 562.139 kb on - strand, within CA264_02410 at 562.182 kb on - strand, within CA264_02410 at 562.228 kb on - strand, within CA264_02410 at 562.285 kb on + strand, within CA264_02410
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 559,182 - -0.3 559,293 + -0.2 559,293 + -0.4 559,293 + -0.5 559,294 - +0.5 559,294 - +0.6 559,328 + +0.0 559,378 + +0.2 559,379 - +0.7 559,382 + -0.1 559,383 - +0.4 559,441 - +0.6 559,441 - -0.1 559,441 - +0.8 559,495 + +0.1 559,504 + +0.5 559,505 - -0.3 559,515 - -0.0 559,530 + -0.7 559,539 - -0.2 559,562 - +0.2 559,562 - +0.2 559,564 - +0.6 559,593 + -0.4 559,607 + +1.0 559,608 - +0.9 559,622 - +0.4 559,652 - -1.4 559,658 - +0.9 559,681 + +1.7 559,704 + +2.6 559,708 - +0.2 559,708 - -0.2 559,731 + -0.3 559,731 + +0.0 559,732 - +0.3 559,734 + -0.0 559,734 + -0.0 559,735 - +0.3 559,735 - +0.5 559,740 + -0.3 559,740 + +0.3 559,741 - +0.5 559,741 - +1.0 559,741 - +0.1 559,741 - +0.8 559,741 - +0.1 559,741 - +0.0 559,741 - +0.5 559,741 - +1.4 559,742 + +0.3 559,743 - +0.1 559,746 - +1.1 559,755 + +2.0 559,772 - -0.0 559,785 - -0.2 559,793 - -0.1 559,846 + +0.6 559,847 - +0.4 559,876 + -0.1 560,014 - -0.3 560,083 + +0.2 560,203 - +0.7 560,203 - -0.1 560,270 - CA264_02405 0.10 +0.0 560,270 - CA264_02405 0.10 -0.1 560,292 + CA264_02405 0.12 +0.3 560,293 - CA264_02405 0.12 -0.5 560,299 + CA264_02405 0.13 -0.1 560,351 + CA264_02405 0.17 +1.3 560,351 + CA264_02405 0.17 +1.6 560,351 + CA264_02405 0.17 -0.0 560,352 - CA264_02405 0.17 -1.0 560,646 + CA264_02405 0.42 +0.4 560,646 + CA264_02405 0.42 -0.3 560,651 + CA264_02405 0.42 -0.1 560,652 - CA264_02405 0.42 -0.8 560,652 - CA264_02405 0.42 +0.3 560,693 - CA264_02405 0.46 -0.8 560,716 + CA264_02405 0.48 -0.4 560,855 + CA264_02405 0.59 +0.7 560,914 - CA264_02405 0.64 +0.1 560,957 + CA264_02405 0.68 -1.0 560,958 - CA264_02405 0.68 -0.6 560,977 + CA264_02405 0.70 -0.2 560,977 + CA264_02405 0.70 -0.4 560,978 - CA264_02405 0.70 -0.2 561,018 + CA264_02405 0.73 -0.9 561,019 - CA264_02405 0.73 +0.3 561,019 - CA264_02405 0.73 +0.4 561,162 + CA264_02405 0.85 +0.7 561,163 - CA264_02405 0.85 -0.2 561,321 - +0.0 561,357 - +0.4 561,363 + -0.1 561,364 - -0.3 561,364 - +0.2 561,364 - +0.5 561,430 + -1.6 561,432 + -0.1 561,433 - -0.7 561,433 - +0.1 561,437 + -0.3 561,437 + +0.5 561,438 - +0.3 561,545 - -0.5 561,545 - -0.5 561,577 + -0.8 561,587 + -0.3 561,588 - +0.4 561,593 - -2.1 561,593 - -0.4 561,596 + CA264_02410 0.10 +0.5 561,596 + CA264_02410 0.10 -0.4 561,596 + CA264_02410 0.10 -1.0 561,596 + CA264_02410 0.10 +0.7 561,596 + CA264_02410 0.10 -0.2 561,597 - CA264_02410 0.10 -0.1 561,597 - CA264_02410 0.10 -0.6 561,597 - CA264_02410 0.10 -0.6 561,597 - CA264_02410 0.10 -0.1 561,597 - CA264_02410 0.10 +0.3 561,597 - CA264_02410 0.10 -0.1 561,674 - CA264_02410 0.16 -0.3 561,711 - CA264_02410 0.19 -1.1 561,756 - CA264_02410 0.22 -0.6 561,795 + CA264_02410 0.25 +0.5 561,797 + CA264_02410 0.25 -0.3 561,798 - CA264_02410 0.26 +2.3 561,798 - CA264_02410 0.26 -0.9 561,866 + CA264_02410 0.31 +0.6 561,875 - CA264_02410 0.31 +1.1 562,139 - CA264_02410 0.51 -0.9 562,182 - CA264_02410 0.55 +2.3 562,228 - CA264_02410 0.58 +0.7 562,285 + CA264_02410 0.62 -1.2
Or see this region's nucleotide sequence