Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02245

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02240 and CA264_02245 are separated by 210 nucleotidesCA264_02245 and CA264_02250 are separated by 47 nucleotides CA264_02240: CA264_02240 - TonB-dependent receptor, at 516,081 to 518,411 _02240 CA264_02245: CA264_02245 - hypothetical protein, at 518,622 to 519,974 _02245 CA264_02250: CA264_02250 - peptidase M61, at 520,022 to 521,608 _02250 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1 2 3at 517.637 kb on + strand, within CA264_02240at 517.638 kb on - strand, within CA264_02240at 517.648 kb on - strand, within CA264_02240at 517.653 kb on - strand, within CA264_02240at 517.669 kb on - strand, within CA264_02240at 517.703 kb on + strand, within CA264_02240at 517.722 kb on + strand, within CA264_02240at 518.025 kb on + strand, within CA264_02240at 518.047 kb on - strand, within CA264_02240at 518.170 kb on + strand, within CA264_02240at 518.179 kb on + strandat 518.180 kb on - strandat 518.332 kb on - strandat 518.447 kb on - strandat 518.447 kb on - strandat 518.493 kb on + strandat 518.510 kb on + strandat 518.511 kb on - strandat 518.541 kb on - strandat 518.587 kb on - strandat 518.589 kb on + strandat 518.590 kb on - strandat 518.623 kb on + strandat 518.632 kb on + strandat 518.632 kb on + strandat 518.660 kb on - strandat 518.816 kb on + strand, within CA264_02245at 518.893 kb on + strand, within CA264_02245at 518.893 kb on + strand, within CA264_02245at 518.893 kb on + strand, within CA264_02245at 518.992 kb on - strand, within CA264_02245at 519.080 kb on - strand, within CA264_02245at 519.280 kb on + strand, within CA264_02245at 519.338 kb on - strand, within CA264_02245at 519.338 kb on - strand, within CA264_02245at 519.356 kb on + strand, within CA264_02245at 519.356 kb on + strand, within CA264_02245at 519.552 kb on + strand, within CA264_02245at 519.552 kb on + strand, within CA264_02245at 519.720 kb on - strand, within CA264_02245at 519.745 kb on - strand, within CA264_02245at 519.770 kb on - strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.775 kb on + strand, within CA264_02245at 519.776 kb on - strand, within CA264_02245at 519.776 kb on - strand, within CA264_02245at 519.817 kb on + strand, within CA264_02245at 519.914 kb on + strandat 519.921 kb on + strandat 519.921 kb on + strandat 519.981 kb on - strandat 519.985 kb on + strandat 519.986 kb on - strandat 519.987 kb on + strandat 519.988 kb on - strandat 519.991 kb on - strandat 520.010 kb on + strandat 520.023 kb on + strandat 520.024 kb on - strandat 520.055 kb on + strandat 520.055 kb on + strandat 520.056 kb on - strandat 520.134 kb on - strandat 520.205 kb on + strand, within CA264_02250at 520.206 kb on - strand, within CA264_02250at 520.206 kb on - strand, within CA264_02250at 520.206 kb on - strand, within CA264_02250at 520.238 kb on + strand, within CA264_02250at 520.422 kb on + strand, within CA264_02250at 520.422 kb on + strand, within CA264_02250at 520.423 kb on - strand, within CA264_02250at 520.426 kb on + strand, within CA264_02250at 520.426 kb on + strand, within CA264_02250at 520.426 kb on + strand, within CA264_02250at 520.502 kb on + strand, within CA264_02250at 520.503 kb on - strand, within CA264_02250at 520.538 kb on + strand, within CA264_02250at 520.539 kb on - strand, within CA264_02250at 520.572 kb on + strand, within CA264_02250at 520.572 kb on + strand, within CA264_02250at 520.573 kb on - strand, within CA264_02250at 520.573 kb on - strand, within CA264_02250at 520.573 kb on - strand, within CA264_02250at 520.611 kb on + strand, within CA264_02250at 520.702 kb on - strand, within CA264_02250at 520.755 kb on + strand, within CA264_02250at 520.812 kb on + strand, within CA264_02250at 520.813 kb on - strand, within CA264_02250at 520.866 kb on + strand, within CA264_02250at 520.936 kb on + strand, within CA264_02250at 520.937 kb on - strand, within CA264_02250at 520.945 kb on + strand, within CA264_02250

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
517,637 + CA264_02240 0.67 +0.4
517,638 - CA264_02240 0.67 +0.8
517,648 - CA264_02240 0.67 -0.5
517,653 - CA264_02240 0.67 -0.8
517,669 - CA264_02240 0.68 +0.3
517,703 + CA264_02240 0.70 +0.5
517,722 + CA264_02240 0.70 +0.2
518,025 + CA264_02240 0.83 +1.3
518,047 - CA264_02240 0.84 -1.1
518,170 + CA264_02240 0.90 +0.1
518,179 + +0.0
518,180 - +0.1
518,332 - +0.3
518,447 - -0.1
518,447 - -0.4
518,493 + -2.2
518,510 + -0.3
518,511 - +0.8
518,541 - +0.4
518,587 - -1.1
518,589 + -0.0
518,590 - -0.9
518,623 + +0.2
518,632 + +0.7
518,632 + -0.2
518,660 - -0.7
518,816 + CA264_02245 0.14 +0.2
518,893 + CA264_02245 0.20 -0.6
518,893 + CA264_02245 0.20 +0.3
518,893 + CA264_02245 0.20 +0.4
518,992 - CA264_02245 0.27 -0.5
519,080 - CA264_02245 0.34 -0.9
519,280 + CA264_02245 0.49 +0.5
519,338 - CA264_02245 0.53 -0.4
519,338 - CA264_02245 0.53 +0.0
519,356 + CA264_02245 0.54 -0.3
519,356 + CA264_02245 0.54 -0.7
519,552 + CA264_02245 0.69 +0.0
519,552 + CA264_02245 0.69 +1.8
519,720 - CA264_02245 0.81 +0.6
519,745 - CA264_02245 0.83 -0.2
519,770 - CA264_02245 0.85 -0.9
519,775 + CA264_02245 0.85 -0.6
519,775 + CA264_02245 0.85 +0.8
519,775 + CA264_02245 0.85 +0.3
519,775 + CA264_02245 0.85 +0.2
519,775 + CA264_02245 0.85 -0.3
519,775 + CA264_02245 0.85 -0.2
519,775 + CA264_02245 0.85 -0.2
519,776 - CA264_02245 0.85 -0.3
519,776 - CA264_02245 0.85 +0.2
519,817 + CA264_02245 0.88 -0.2
519,914 + -0.8
519,921 + +0.4
519,921 + -0.8
519,981 - -0.2
519,985 + +0.1
519,986 - +0.2
519,987 + -0.2
519,988 - -0.5
519,991 - -0.7
520,010 + -0.5
520,023 + +0.5
520,024 - -2.1
520,055 + +0.2
520,055 + -0.1
520,056 - +1.1
520,134 - -1.2
520,205 + CA264_02250 0.12 +0.1
520,206 - CA264_02250 0.12 +0.2
520,206 - CA264_02250 0.12 -0.4
520,206 - CA264_02250 0.12 -1.3
520,238 + CA264_02250 0.14 -0.3
520,422 + CA264_02250 0.25 -0.2
520,422 + CA264_02250 0.25 +0.4
520,423 - CA264_02250 0.25 -0.5
520,426 + CA264_02250 0.25 +0.2
520,426 + CA264_02250 0.25 +0.3
520,426 + CA264_02250 0.25 -1.1
520,502 + CA264_02250 0.30 -0.2
520,503 - CA264_02250 0.30 +2.8
520,538 + CA264_02250 0.33 -1.7
520,539 - CA264_02250 0.33 -0.4
520,572 + CA264_02250 0.35 -0.4
520,572 + CA264_02250 0.35 +0.8
520,573 - CA264_02250 0.35 -0.5
520,573 - CA264_02250 0.35 +2.3
520,573 - CA264_02250 0.35 -1.0
520,611 + CA264_02250 0.37 -0.1
520,702 - CA264_02250 0.43 -0.6
520,755 + CA264_02250 0.46 +0.7
520,812 + CA264_02250 0.50 +0.1
520,813 - CA264_02250 0.50 +0.0
520,866 + CA264_02250 0.53 +0.4
520,936 + CA264_02250 0.58 +0.8
520,937 - CA264_02250 0.58 +0.0
520,945 + CA264_02250 0.58 -0.1

Or see this region's nucleotide sequence