Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01645

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01640 and CA264_01645 are separated by 354 nucleotidesCA264_01645 and CA264_01650 are separated by 168 nucleotides CA264_01640: CA264_01640 - DEAD/DEAH box helicase, at 385,758 to 387,176 _01640 CA264_01645: CA264_01645 - hypothetical protein, at 387,531 to 387,713 _01645 CA264_01650: CA264_01650 - YebC/PmpR family DNA-binding transcriptional regulator, at 387,882 to 388,637 _01650 Position (kb) 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 386.558 kb on - strand, within CA264_01640at 386.558 kb on - strand, within CA264_01640at 386.558 kb on - strand, within CA264_01640at 386.580 kb on + strand, within CA264_01640at 386.582 kb on + strand, within CA264_01640at 386.583 kb on - strand, within CA264_01640at 386.802 kb on + strand, within CA264_01640at 386.806 kb on + strand, within CA264_01640at 386.806 kb on + strand, within CA264_01640at 386.850 kb on - strand, within CA264_01640at 386.853 kb on - strand, within CA264_01640at 386.973 kb on + strand, within CA264_01640at 386.974 kb on - strand, within CA264_01640at 386.974 kb on - strand, within CA264_01640at 386.974 kb on - strand, within CA264_01640at 387.029 kb on - strand, within CA264_01640at 387.053 kb on + strandat 387.054 kb on - strandat 387.169 kb on + strandat 387.254 kb on - strandat 387.295 kb on - strandat 387.300 kb on + strandat 387.301 kb on - strandat 387.304 kb on - strandat 387.306 kb on - strandat 387.306 kb on - strandat 387.310 kb on - strandat 387.354 kb on + strandat 387.383 kb on + strandat 387.471 kb on + strandat 387.471 kb on + strandat 387.471 kb on + strandat 387.471 kb on + strandat 387.472 kb on - strandat 387.472 kb on - strandat 387.472 kb on - strandat 387.503 kb on + strandat 387.504 kb on - strandat 387.530 kb on - strandat 387.579 kb on - strand, within CA264_01645at 387.633 kb on + strand, within CA264_01645at 387.683 kb on + strand, within CA264_01645at 387.690 kb on + strand, within CA264_01645at 387.741 kb on + strandat 387.882 kb on - strandat 387.953 kb on - strandat 388.040 kb on - strand, within CA264_01650at 388.040 kb on - strand, within CA264_01650at 388.040 kb on - strand, within CA264_01650at 388.138 kb on - strand, within CA264_01650at 388.171 kb on - strand, within CA264_01650at 388.171 kb on - strand, within CA264_01650at 388.171 kb on - strand, within CA264_01650at 388.203 kb on - strand, within CA264_01650at 388.268 kb on - strand, within CA264_01650at 388.395 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.407 kb on + strand, within CA264_01650at 388.408 kb on - strand, within CA264_01650at 388.408 kb on - strand, within CA264_01650at 388.408 kb on - strand, within CA264_01650at 388.513 kb on + strand, within CA264_01650at 388.589 kb on - strandat 388.590 kb on + strandat 388.590 kb on + strandat 388.591 kb on - strandat 388.591 kb on - strandat 388.591 kb on - strandat 388.596 kb on - strandat 388.636 kb on - strandat 388.647 kb on + strandat 388.648 kb on - strandat 388.648 kb on - strandat 388.651 kb on - strandat 388.660 kb on + strandat 388.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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386,558 - CA264_01640 0.56 -1.3
386,558 - CA264_01640 0.56 -1.6
386,558 - CA264_01640 0.56 -0.8
386,580 + CA264_01640 0.58 -0.2
386,582 + CA264_01640 0.58 -0.9
386,583 - CA264_01640 0.58 -2.8
386,802 + CA264_01640 0.74 -0.5
386,806 + CA264_01640 0.74 -0.7
386,806 + CA264_01640 0.74 -0.9
386,850 - CA264_01640 0.77 -1.4
386,853 - CA264_01640 0.77 -0.8
386,973 + CA264_01640 0.86 -0.7
386,974 - CA264_01640 0.86 -0.0
386,974 - CA264_01640 0.86 -2.1
386,974 - CA264_01640 0.86 +0.6
387,029 - CA264_01640 0.90 -0.9
387,053 + +0.1
387,054 - +0.1
387,169 + -0.4
387,254 - -0.3
387,295 - -1.4
387,300 + +0.1
387,301 - -0.5
387,304 - +0.4
387,306 - +0.8
387,306 - -0.6
387,310 - -0.2
387,354 + -0.3
387,383 + -0.9
387,471 + +0.2
387,471 + -0.6
387,471 + -0.1
387,471 + -0.7
387,472 - +0.0
387,472 - -0.6
387,472 - -0.2
387,503 + -0.7
387,504 - -0.4
387,530 - +1.2
387,579 - CA264_01645 0.26 -0.9
387,633 + CA264_01645 0.56 +1.0
387,683 + CA264_01645 0.83 -0.5
387,690 + CA264_01645 0.87 +0.5
387,741 + -1.0
387,882 - -0.1
387,953 - +0.6
388,040 - CA264_01650 0.21 +0.7
388,040 - CA264_01650 0.21 -0.1
388,040 - CA264_01650 0.21 +0.9
388,138 - CA264_01650 0.34 +2.4
388,171 - CA264_01650 0.38 -1.4
388,171 - CA264_01650 0.38 +0.2
388,171 - CA264_01650 0.38 -0.1
388,203 - CA264_01650 0.42 +0.0
388,268 - CA264_01650 0.51 +1.6
388,395 + CA264_01650 0.68 -0.3
388,407 + CA264_01650 0.69 -0.2
388,407 + CA264_01650 0.69 +0.1
388,407 + CA264_01650 0.69 -0.3
388,407 + CA264_01650 0.69 -0.6
388,407 + CA264_01650 0.69 +0.3
388,407 + CA264_01650 0.69 +0.7
388,408 - CA264_01650 0.70 +0.5
388,408 - CA264_01650 0.70 +0.1
388,408 - CA264_01650 0.70 -0.1
388,513 + CA264_01650 0.83 -0.8
388,589 - -0.3
388,590 + -1.2
388,590 + +0.3
388,591 - -0.1
388,591 - -1.3
388,591 - +0.8
388,596 - -0.6
388,636 - +0.4
388,647 + -0.1
388,648 - +0.6
388,648 - +0.6
388,651 - +0.9
388,660 + -0.2
388,661 - +0.1

Or see this region's nucleotide sequence