Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01450 and CA264_01455 are separated by 97 nucleotides CA264_01455 and CA264_01460 are separated by 10 nucleotides CA264_01460 and CA264_01465 are separated by 219 nucleotides CA264_01465 and CA264_01470 are separated by 94 nucleotides CA264_01470 and CA264_01475 are separated by 402 nucleotides
CA264_01450: CA264_01450 - 16S ribosomal RNA, at 344,144 to 345,664
_01450
CA264_01455: CA264_01455 - tRNA-Ile, at 345,762 to 345,838
_01455
CA264_01460: CA264_01460 - tRNA-Ala, at 345,849 to 345,922
_01460
CA264_01465: CA264_01465 - 23S ribosomal RNA, at 346,142 to 349,027
_01465
CA264_01470: CA264_01470 - 5S ribosomal RNA, at 349,122 to 349,233
_01470
CA264_01475: CA264_01475 - hypothetical protein, at 349,636 to 351,642
_01475
Position (kb) 346
347
348
349
350 Strain fitness (log2 ratio) -1
0
1
2 at 349.567 kb on + strand at 349.580 kb on + strand at 349.588 kb on + strand at 349.588 kb on + strand at 349.588 kb on + strand at 349.589 kb on - strand at 349.626 kb on - strand at 349.636 kb on - strand at 349.646 kb on + strand at 349.646 kb on + strand at 349.646 kb on + strand at 349.646 kb on + strand at 349.646 kb on + strand at 349.648 kb on + strand at 349.648 kb on + strand at 349.722 kb on + strand at 349.730 kb on + strand at 349.755 kb on - strand at 349.923 kb on - strand, within CA264_01475 at 349.927 kb on - strand, within CA264_01475 at 349.933 kb on + strand, within CA264_01475 at 349.933 kb on + strand, within CA264_01475 at 349.933 kb on + strand, within CA264_01475 at 349.934 kb on - strand, within CA264_01475 at 349.935 kb on + strand, within CA264_01475 at 349.935 kb on + strand, within CA264_01475 at 349.936 kb on - strand, within CA264_01475 at 349.936 kb on - strand, within CA264_01475 at 349.936 kb on - strand, within CA264_01475 at 349.950 kb on - strand, within CA264_01475 at 349.950 kb on - strand, within CA264_01475 at 349.950 kb on - strand, within CA264_01475 at 349.950 kb on - strand, within CA264_01475
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 349,567 + +0.1 349,580 + +0.0 349,588 + -0.1 349,588 + +0.4 349,588 + -0.2 349,589 - +1.3 349,626 - +1.0 349,636 - -0.8 349,646 + -0.1 349,646 + +1.2 349,646 + +0.1 349,646 + -1.3 349,646 + -0.6 349,648 + -1.7 349,648 + +0.3 349,722 + -1.1 349,730 + -0.5 349,755 - -1.5 349,923 - CA264_01475 0.14 -0.6 349,927 - CA264_01475 0.14 -0.3 349,933 + CA264_01475 0.15 -0.4 349,933 + CA264_01475 0.15 -1.2 349,933 + CA264_01475 0.15 -1.2 349,934 - CA264_01475 0.15 -1.0 349,935 + CA264_01475 0.15 +1.8 349,935 + CA264_01475 0.15 -0.1 349,936 - CA264_01475 0.15 -0.2 349,936 - CA264_01475 0.15 +1.0 349,936 - CA264_01475 0.15 -0.5 349,950 - CA264_01475 0.16 -0.4 349,950 - CA264_01475 0.16 +0.8 349,950 - CA264_01475 0.16 -0.1 349,950 - CA264_01475 0.16 +0.1
Or see this region's nucleotide sequence