Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00865 and CA264_00870 are separated by 75 nucleotides CA264_00870 and CA264_00875 are separated by 20 nucleotides CA264_00875 and CA264_00880 are separated by 258 nucleotides
CA264_00865: CA264_00865 - dihydroorotate dehydrogenase (quinone), at 184,207 to 185,238
_00865
CA264_00870: CA264_00870 - DNA translocase FtsK, at 185,314 to 187,944
_00870
CA264_00875: CA264_00875 - cell envelope biogenesis protein LolA, at 187,965 to 188,609
_00875
CA264_00880: CA264_00880 - orotidine 5'-phosphate decarboxylase, at 188,868 to 189,695
_00880
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 184.335 kb on + strand, within CA264_00865 at 184.377 kb on + strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.691 kb on - strand, within CA264_00865 at 184.724 kb on - strand, within CA264_00865 at 185.182 kb on - strand at 185.205 kb on - strand at 185.241 kb on + strand at 185.241 kb on + strand at 185.241 kb on + strand at 185.241 kb on + strand at 185.242 kb on - strand at 185.297 kb on + strand at 185.297 kb on + strand at 185.301 kb on + strand at 185.475 kb on - strand at 187.950 kb on + strand at 187.951 kb on - strand at 187.951 kb on - strand at 187.953 kb on + strand at 187.953 kb on + strand at 187.954 kb on - strand at 187.984 kb on + strand at 188.073 kb on + strand, within CA264_00875 at 188.178 kb on - strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.322 kb on + strand, within CA264_00875 at 188.322 kb on + strand, within CA264_00875 at 188.324 kb on + strand, within CA264_00875 at 188.335 kb on - strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.337 kb on - strand, within CA264_00875 at 188.346 kb on + strand, within CA264_00875 at 188.390 kb on - strand, within CA264_00875 at 188.431 kb on + strand, within CA264_00875 at 188.439 kb on + strand, within CA264_00875 at 188.440 kb on - strand, within CA264_00875 at 188.504 kb on + strand, within CA264_00875 at 188.505 kb on - strand, within CA264_00875 at 188.509 kb on - strand, within CA264_00875 at 188.510 kb on + strand, within CA264_00875 at 188.559 kb on - strand at 188.578 kb on - strand at 188.578 kb on - strand at 188.579 kb on + strand at 188.603 kb on - strand at 188.608 kb on - strand at 188.622 kb on + strand at 188.623 kb on - strand at 188.627 kb on + strand at 188.665 kb on + strand at 188.669 kb on + strand at 188.757 kb on + strand at 188.757 kb on + strand at 188.758 kb on - strand at 188.758 kb on - strand at 188.780 kb on + strand at 188.780 kb on + strand at 188.843 kb on + strand at 188.844 kb on - strand at 188.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 184,335 + CA264_00865 0.12 -0.2 184,377 + CA264_00865 0.16 -0.2 184,685 - CA264_00865 0.46 -0.4 184,685 - CA264_00865 0.46 +0.1 184,691 - CA264_00865 0.47 +0.3 184,724 - CA264_00865 0.50 -0.3 185,182 - -0.2 185,205 - -0.8 185,241 + -1.0 185,241 + -0.2 185,241 + -0.7 185,241 + -0.6 185,242 - -1.1 185,297 + -0.6 185,297 + -0.7 185,301 + +0.3 185,475 - -0.9 187,950 + +0.1 187,951 - -0.0 187,951 - +0.3 187,953 + +0.1 187,953 + -0.2 187,954 - -0.7 187,984 + -1.7 188,073 + CA264_00875 0.17 -2.4 188,178 - CA264_00875 0.33 -3.7 188,232 + CA264_00875 0.41 -0.9 188,232 + CA264_00875 0.41 -1.3 188,232 + CA264_00875 0.41 -0.9 188,322 + CA264_00875 0.55 -2.5 188,322 + CA264_00875 0.55 +0.1 188,324 + CA264_00875 0.56 -0.9 188,335 - CA264_00875 0.57 -2.9 188,336 + CA264_00875 0.58 -2.7 188,336 + CA264_00875 0.58 -3.7 188,336 + CA264_00875 0.58 +0.8 188,336 + CA264_00875 0.58 -4.0 188,336 + CA264_00875 0.58 -0.2 188,336 + CA264_00875 0.58 -1.4 188,337 - CA264_00875 0.58 -1.2 188,346 + CA264_00875 0.59 -4.5 188,390 - CA264_00875 0.66 +0.1 188,431 + CA264_00875 0.72 -3.7 188,439 + CA264_00875 0.73 -3.8 188,440 - CA264_00875 0.74 -2.0 188,504 + CA264_00875 0.84 -2.4 188,505 - CA264_00875 0.84 -2.0 188,509 - CA264_00875 0.84 -3.7 188,510 + CA264_00875 0.84 -0.6 188,559 - -1.5 188,578 - -3.4 188,578 - -2.4 188,579 + +0.4 188,603 - +0.8 188,608 - -0.0 188,622 + +0.6 188,623 - -0.3 188,627 + -0.2 188,665 + +0.5 188,669 + +0.6 188,757 + +0.8 188,757 + +0.2 188,758 - -0.1 188,758 - -0.8 188,780 + -0.1 188,780 + -0.1 188,843 + +0.7 188,844 - -0.8 188,914 - +0.0
Or see this region's nucleotide sequence