Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00855 and CA264_00860 are separated by 305 nucleotides CA264_00860 and CA264_00865 are separated by 276 nucleotides
CA264_00855: CA264_00855 - RNA helicase, at 181,610 to 182,752
_00855
CA264_00860: CA264_00860 - CPBP family intramembrane metalloprotease, at 183,058 to 183,930
_00860
CA264_00865: CA264_00865 - dihydroorotate dehydrogenase (quinone), at 184,207 to 185,238
_00865
Position (kb) 183
184 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.082 kb on + strand, within CA264_00855 at 182.083 kb on - strand, within CA264_00855 at 182.237 kb on + strand, within CA264_00855 at 182.258 kb on - strand, within CA264_00855 at 182.307 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.408 kb on + strand, within CA264_00855 at 182.411 kb on - strand, within CA264_00855 at 182.426 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.531 kb on + strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855 at 182.630 kb on + strand, within CA264_00855 at 182.714 kb on + strand at 182.714 kb on + strand at 182.752 kb on + strand at 182.753 kb on - strand at 182.754 kb on + strand at 182.755 kb on - strand at 182.755 kb on - strand at 182.755 kb on - strand at 182.755 kb on - strand at 182.763 kb on - strand at 182.763 kb on - strand at 182.763 kb on - strand at 182.775 kb on + strand at 182.775 kb on + strand at 182.777 kb on + strand at 182.777 kb on + strand at 182.778 kb on - strand at 182.779 kb on + strand at 182.795 kb on - strand at 182.835 kb on + strand at 182.835 kb on + strand at 182.845 kb on - strand at 182.945 kb on + strand at 182.955 kb on + strand at 182.956 kb on - strand at 182.956 kb on - strand at 182.956 kb on - strand at 182.958 kb on + strand at 182.959 kb on + strand at 182.975 kb on - strand at 183.034 kb on + strand at 183.034 kb on + strand at 183.034 kb on + strand at 183.041 kb on - strand at 183.072 kb on + strand at 183.119 kb on - strand at 183.236 kb on + strand, within CA264_00860 at 183.251 kb on - strand, within CA264_00860 at 183.251 kb on - strand, within CA264_00860 at 183.255 kb on + strand, within CA264_00860 at 183.256 kb on - strand, within CA264_00860 at 183.281 kb on - strand, within CA264_00860 at 183.302 kb on + strand, within CA264_00860 at 183.303 kb on - strand, within CA264_00860 at 183.347 kb on + strand, within CA264_00860 at 183.347 kb on + strand, within CA264_00860 at 183.355 kb on + strand, within CA264_00860 at 183.385 kb on - strand, within CA264_00860 at 183.385 kb on - strand, within CA264_00860 at 183.385 kb on - strand, within CA264_00860 at 183.386 kb on + strand, within CA264_00860 at 183.386 kb on + strand, within CA264_00860 at 183.387 kb on - strand, within CA264_00860 at 183.398 kb on + strand, within CA264_00860 at 183.398 kb on + strand, within CA264_00860 at 183.437 kb on + strand, within CA264_00860 at 183.516 kb on - strand, within CA264_00860 at 183.524 kb on + strand, within CA264_00860 at 183.525 kb on - strand, within CA264_00860 at 183.525 kb on - strand, within CA264_00860 at 183.562 kb on - strand, within CA264_00860 at 183.562 kb on - strand, within CA264_00860 at 183.612 kb on + strand, within CA264_00860 at 183.676 kb on + strand, within CA264_00860 at 183.677 kb on - strand, within CA264_00860 at 183.677 kb on - strand, within CA264_00860 at 183.680 kb on - strand, within CA264_00860 at 183.722 kb on + strand, within CA264_00860 at 183.745 kb on - strand, within CA264_00860 at 183.749 kb on + strand, within CA264_00860 at 183.749 kb on + strand, within CA264_00860 at 183.750 kb on - strand, within CA264_00860 at 183.819 kb on + strand, within CA264_00860 at 183.819 kb on + strand, within CA264_00860 at 183.819 kb on + strand, within CA264_00860 at 183.830 kb on - strand, within CA264_00860 at 183.848 kb on + strand at 183.848 kb on + strand at 183.854 kb on + strand at 183.862 kb on - strand at 183.937 kb on + strand at 183.938 kb on - strand at 183.955 kb on - strand at 183.960 kb on + strand at 183.991 kb on + strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.999 kb on + strand at 183.999 kb on + strand at 183.999 kb on + strand at 184.000 kb on - strand at 184.023 kb on + strand at 184.070 kb on + strand at 184.070 kb on + strand at 184.070 kb on + strand at 184.074 kb on + strand at 184.074 kb on + strand at 184.075 kb on - strand at 184.149 kb on + strand at 184.149 kb on + strand at 184.150 kb on - strand at 184.150 kb on - strand at 184.150 kb on - strand at 184.150 kb on - strand at 184.156 kb on + strand at 184.157 kb on - strand at 184.157 kb on - strand at 184.157 kb on - strand at 184.161 kb on + strand at 184.161 kb on + strand at 184.162 kb on - strand at 184.170 kb on + strand at 184.170 kb on + strand at 184.186 kb on + strand at 184.186 kb on + strand at 184.187 kb on - strand at 184.188 kb on + strand at 184.189 kb on - strand at 184.189 kb on - strand at 184.193 kb on + strand at 184.201 kb on + strand at 184.264 kb on + strand at 184.264 kb on + strand at 184.264 kb on + strand at 184.335 kb on + strand, within CA264_00865 at 184.377 kb on + strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.691 kb on - strand, within CA264_00865 at 184.724 kb on - strand, within CA264_00865
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 182,082 + CA264_00855 0.41 -0.9 182,083 - CA264_00855 0.41 -0.2 182,237 + CA264_00855 0.55 -0.2 182,258 - CA264_00855 0.57 +0.0 182,307 - CA264_00855 0.61 -0.6 182,373 - CA264_00855 0.67 -0.6 182,373 - CA264_00855 0.67 -0.6 182,373 - CA264_00855 0.67 +0.1 182,408 + CA264_00855 0.70 +1.1 182,411 - CA264_00855 0.70 -1.1 182,426 + CA264_00855 0.71 -0.3 182,519 + CA264_00855 0.80 -0.1 182,519 + CA264_00855 0.80 +1.4 182,520 - CA264_00855 0.80 -2.0 182,520 - CA264_00855 0.80 +0.1 182,521 + CA264_00855 0.80 -0.9 182,521 + CA264_00855 0.80 +1.2 182,521 + CA264_00855 0.80 -0.2 182,522 - CA264_00855 0.80 -0.6 182,522 - CA264_00855 0.80 -0.0 182,531 + CA264_00855 0.81 -0.5 182,574 - CA264_00855 0.84 -0.2 182,574 - CA264_00855 0.84 +0.3 182,630 + CA264_00855 0.89 +0.0 182,714 + -0.6 182,714 + +0.4 182,752 + +0.6 182,753 - +0.1 182,754 + +0.0 182,755 - -1.0 182,755 - +0.0 182,755 - +0.7 182,755 - -1.8 182,763 - -0.3 182,763 - -0.1 182,763 - +0.3 182,775 + -0.2 182,775 + -0.9 182,777 + +0.1 182,777 + -0.2 182,778 - +1.4 182,779 + +0.4 182,795 - -0.2 182,835 + +0.0 182,835 + -0.3 182,845 - +2.7 182,945 + -0.8 182,955 + +0.3 182,956 - -0.7 182,956 - -0.7 182,956 - -0.1 182,958 + -0.6 182,959 + -1.4 182,975 - +0.1 183,034 + -0.2 183,034 + -0.6 183,034 + -0.0 183,041 - -1.1 183,072 + +0.7 183,119 - -1.6 183,236 + CA264_00860 0.20 +2.1 183,251 - CA264_00860 0.22 +0.2 183,251 - CA264_00860 0.22 -0.9 183,255 + CA264_00860 0.23 +1.3 183,256 - CA264_00860 0.23 -0.0 183,281 - CA264_00860 0.26 -0.0 183,302 + CA264_00860 0.28 -0.0 183,303 - CA264_00860 0.28 -0.7 183,347 + CA264_00860 0.33 -0.0 183,347 + CA264_00860 0.33 -0.4 183,355 + CA264_00860 0.34 +1.1 183,385 - CA264_00860 0.37 +0.9 183,385 - CA264_00860 0.37 +0.4 183,385 - CA264_00860 0.37 +0.6 183,386 + CA264_00860 0.38 -0.7 183,386 + CA264_00860 0.38 +1.1 183,387 - CA264_00860 0.38 -0.7 183,398 + CA264_00860 0.39 -0.7 183,398 + CA264_00860 0.39 -0.2 183,437 + CA264_00860 0.43 +0.9 183,516 - CA264_00860 0.52 +0.2 183,524 + CA264_00860 0.53 -0.2 183,525 - CA264_00860 0.53 +0.6 183,525 - CA264_00860 0.53 -0.0 183,562 - CA264_00860 0.58 -0.3 183,562 - CA264_00860 0.58 +0.5 183,612 + CA264_00860 0.63 -0.6 183,676 + CA264_00860 0.71 -0.5 183,677 - CA264_00860 0.71 -0.2 183,677 - CA264_00860 0.71 +1.4 183,680 - CA264_00860 0.71 +0.8 183,722 + CA264_00860 0.76 -0.1 183,745 - CA264_00860 0.79 -0.3 183,749 + CA264_00860 0.79 -0.9 183,749 + CA264_00860 0.79 +0.2 183,750 - CA264_00860 0.79 -0.3 183,819 + CA264_00860 0.87 +0.8 183,819 + CA264_00860 0.87 +2.4 183,819 + CA264_00860 0.87 -1.2 183,830 - CA264_00860 0.88 +0.6 183,848 + -0.9 183,848 + -0.3 183,854 + +0.2 183,862 - -0.4 183,937 + -1.1 183,938 - -0.0 183,955 - -0.2 183,960 + -1.7 183,991 + -0.1 183,998 - +2.2 183,998 - +1.7 183,998 - -0.2 183,998 - -0.1 183,999 + +0.7 183,999 + -2.1 183,999 + -0.1 184,000 - +1.0 184,023 + -1.5 184,070 + -0.1 184,070 + +0.4 184,070 + -0.9 184,074 + -0.3 184,074 + +0.1 184,075 - -0.3 184,149 + -0.2 184,149 + +0.2 184,150 - +0.2 184,150 - -0.1 184,150 - +0.2 184,150 - -1.5 184,156 + -0.3 184,157 - +0.0 184,157 - +0.2 184,157 - +0.4 184,161 + +0.7 184,161 + -0.4 184,162 - +0.4 184,170 + -0.0 184,170 + -0.4 184,186 + -0.1 184,186 + -0.7 184,187 - -0.1 184,188 + +0.3 184,189 - -0.5 184,189 - -0.2 184,193 + -0.5 184,201 + -0.1 184,264 + -0.4 184,264 + -0.0 184,264 + +0.1 184,335 + CA264_00865 0.12 -0.2 184,377 + CA264_00865 0.16 -0.2 184,685 - CA264_00865 0.46 -0.4 184,685 - CA264_00865 0.46 +0.1 184,691 - CA264_00865 0.47 +0.3 184,724 - CA264_00865 0.50 -0.3
Or see this region's nucleotide sequence