Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00320 and CA264_00325 are separated by 108 nucleotides CA264_00325 and CA264_00330 are separated by 422 nucleotides
CA264_00320: CA264_00320 - hypothetical protein, at 74,641 to 75,291
_00320
CA264_00325: CA264_00325 - hypothetical protein, at 75,400 to 75,771
_00325
CA264_00330: CA264_00330 - hypothetical protein, at 76,194 to 76,925
_00330
Position (kb) 75
76 Strain fitness (log2 ratio) -1
0
1
2 at 74.405 kb on + strand at 74.461 kb on + strand at 74.462 kb on - strand at 74.462 kb on - strand at 74.505 kb on + strand at 74.723 kb on + strand, within CA264_00320 at 74.723 kb on + strand, within CA264_00320 at 74.780 kb on - strand, within CA264_00320 at 74.862 kb on - strand, within CA264_00320 at 74.957 kb on + strand, within CA264_00320 at 74.958 kb on - strand, within CA264_00320 at 74.961 kb on + strand, within CA264_00320 at 74.962 kb on - strand, within CA264_00320 at 75.041 kb on + strand, within CA264_00320 at 75.086 kb on - strand, within CA264_00320 at 75.107 kb on + strand, within CA264_00320 at 75.108 kb on - strand, within CA264_00320 at 75.108 kb on - strand, within CA264_00320 at 75.261 kb on + strand at 75.311 kb on - strand at 75.393 kb on - strand at 75.423 kb on - strand at 75.423 kb on - strand at 75.426 kb on + strand at 75.554 kb on + strand, within CA264_00325 at 75.555 kb on - strand, within CA264_00325 at 75.608 kb on + strand, within CA264_00325 at 75.669 kb on + strand, within CA264_00325 at 75.669 kb on + strand, within CA264_00325 at 75.689 kb on + strand, within CA264_00325 at 75.690 kb on - strand, within CA264_00325 at 75.690 kb on - strand, within CA264_00325 at 75.738 kb on - strand at 75.871 kb on + strand at 75.872 kb on - strand at 76.024 kb on - strand at 76.167 kb on - strand at 76.207 kb on + strand at 76.208 kb on - strand at 76.208 kb on - strand at 76.211 kb on + strand at 76.211 kb on + strand at 76.211 kb on + strand at 76.326 kb on + strand, within CA264_00330 at 76.327 kb on - strand, within CA264_00330 at 76.419 kb on + strand, within CA264_00330 at 76.424 kb on + strand, within CA264_00330 at 76.564 kb on - strand, within CA264_00330 at 76.582 kb on - strand, within CA264_00330 at 76.708 kb on - strand, within CA264_00330 at 76.723 kb on + strand, within CA264_00330
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 74,405 + -0.0 74,461 + -0.3 74,462 - -1.3 74,462 - -1.4 74,505 + -1.0 74,723 + CA264_00320 0.13 +0.8 74,723 + CA264_00320 0.13 -1.1 74,780 - CA264_00320 0.21 -0.4 74,862 - CA264_00320 0.34 -0.9 74,957 + CA264_00320 0.49 +0.8 74,958 - CA264_00320 0.49 +0.0 74,961 + CA264_00320 0.49 +0.7 74,962 - CA264_00320 0.49 -0.2 75,041 + CA264_00320 0.61 -0.6 75,086 - CA264_00320 0.68 +0.6 75,107 + CA264_00320 0.72 -0.1 75,108 - CA264_00320 0.72 +0.7 75,108 - CA264_00320 0.72 +1.0 75,261 + -0.5 75,311 - -0.5 75,393 - +0.4 75,423 - +0.3 75,423 - +0.8 75,426 + -0.3 75,554 + CA264_00325 0.41 -0.3 75,555 - CA264_00325 0.42 +0.5 75,608 + CA264_00325 0.56 +0.1 75,669 + CA264_00325 0.72 -0.4 75,669 + CA264_00325 0.72 -0.5 75,689 + CA264_00325 0.78 -0.7 75,690 - CA264_00325 0.78 +0.4 75,690 - CA264_00325 0.78 -0.7 75,738 - -0.8 75,871 + -0.5 75,872 - -0.0 76,024 - -0.9 76,167 - -0.5 76,207 + +1.8 76,208 - -0.3 76,208 - +0.1 76,211 + -0.6 76,211 + -0.2 76,211 + -0.1 76,326 + CA264_00330 0.18 -0.6 76,327 - CA264_00330 0.18 -0.4 76,419 + CA264_00330 0.31 +0.2 76,424 + CA264_00330 0.31 -0.5 76,564 - CA264_00330 0.51 -0.8 76,582 - CA264_00330 0.53 -0.3 76,708 - CA264_00330 0.70 +0.1 76,723 + CA264_00330 0.72 -0.2
Or see this region's nucleotide sequence