Experiment: Putrescine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27535 and PS417_27540 are separated by 505 nucleotides PS417_27540 and PS417_27545 are separated by 142 nucleotides PS417_27545 and PS417_27550 are separated by 125 nucleotides
PS417_27535: PS417_27535 - chemotaxis protein CheY, at 5,940,418 to 5,941,164
_27535
PS417_27540: PS417_27540 - argininosuccinate lyase, at 5,941,670 to 5,943,064
_27540
PS417_27545: PS417_27545 - glutathione S-transferase, at 5,943,207 to 5,943,866
_27545
PS417_27550: PS417_27550 - hypothetical protein, at 5,943,992 to 5,944,276
_27550
Position (kb) 5941
5942
5943
5944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5941.078 kb on + strand, within PS417_27535 at 5941.078 kb on + strand, within PS417_27535 at 5941.079 kb on - strand, within PS417_27535 at 5941.164 kb on + strand at 5941.206 kb on + strand at 5941.206 kb on + strand at 5941.207 kb on - strand at 5941.251 kb on - strand at 5941.290 kb on - strand at 5941.290 kb on - strand at 5941.290 kb on - strand at 5941.372 kb on - strand at 5941.391 kb on + strand at 5941.438 kb on + strand at 5941.438 kb on + strand at 5941.439 kb on - strand at 5941.452 kb on + strand at 5941.453 kb on - strand at 5941.489 kb on + strand at 5941.504 kb on + strand at 5941.505 kb on - strand at 5941.505 kb on - strand at 5941.505 kb on - strand at 5941.505 kb on - strand at 5941.569 kb on + strand at 5942.809 kb on - strand, within PS417_27540 at 5943.131 kb on - strand at 5943.131 kb on - strand at 5943.131 kb on - strand at 5943.131 kb on - strand at 5943.388 kb on + strand at 5943.388 kb on + strand, within PS417_27545 at 5943.388 kb on + strand, within PS417_27545 at 5943.388 kb on + strand, within PS417_27545 at 5943.389 kb on - strand, within PS417_27545 at 5943.389 kb on - strand, within PS417_27545 at 5943.398 kb on - strand, within PS417_27545 at 5943.433 kb on + strand, within PS417_27545 at 5943.434 kb on - strand, within PS417_27545 at 5943.434 kb on - strand, within PS417_27545 at 5943.434 kb on - strand, within PS417_27545 at 5943.434 kb on - strand, within PS417_27545 at 5943.571 kb on + strand, within PS417_27545 at 5943.572 kb on - strand, within PS417_27545 at 5943.572 kb on - strand, within PS417_27545 at 5943.572 kb on - strand, within PS417_27545 at 5943.693 kb on - strand, within PS417_27545 at 5943.829 kb on + strand at 5943.830 kb on - strand at 5943.830 kb on - strand at 5943.832 kb on + strand at 5943.833 kb on - strand at 5943.833 kb on - strand at 5943.833 kb on - strand at 5943.837 kb on - strand at 5943.837 kb on - strand at 5943.909 kb on - strand at 5943.910 kb on + strand at 5943.910 kb on + strand at 5943.910 kb on + strand at 5943.911 kb on - strand at 5943.911 kb on - strand at 5943.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Putrescine (C) remove 5,941,078 + PS417_27535 0.88 -0.4 5,941,078 + PS417_27535 0.88 +0.5 5,941,079 - PS417_27535 0.88 -1.2 5,941,164 + -2.2 5,941,206 + +0.2 5,941,206 + -0.4 5,941,207 - -0.2 5,941,251 - -0.9 5,941,290 - -0.1 5,941,290 - -0.1 5,941,290 - -0.5 5,941,372 - -0.5 5,941,391 + -0.6 5,941,438 + -0.5 5,941,438 + -0.0 5,941,439 - -0.4 5,941,452 + -0.5 5,941,453 - -0.8 5,941,489 + -1.7 5,941,504 + -0.3 5,941,505 - -0.3 5,941,505 - -0.2 5,941,505 - -1.1 5,941,505 - -1.6 5,941,569 + -0.2 5,942,809 - PS417_27540 0.82 -1.2 5,943,131 - -0.0 5,943,131 - -0.1 5,943,131 - -1.0 5,943,131 - +0.4 5,943,388 + +0.2 5,943,388 + PS417_27545 0.27 +0.7 5,943,388 + PS417_27545 0.27 +0.9 5,943,388 + PS417_27545 0.27 -0.2 5,943,389 - PS417_27545 0.28 +0.2 5,943,389 - PS417_27545 0.28 -0.8 5,943,398 - PS417_27545 0.29 -0.4 5,943,433 + PS417_27545 0.34 +0.0 5,943,434 - PS417_27545 0.34 +0.7 5,943,434 - PS417_27545 0.34 +1.2 5,943,434 - PS417_27545 0.34 +0.1 5,943,434 - PS417_27545 0.34 +0.3 5,943,571 + PS417_27545 0.55 +1.8 5,943,572 - PS417_27545 0.55 -0.1 5,943,572 - PS417_27545 0.55 -0.1 5,943,572 - PS417_27545 0.55 -0.2 5,943,693 - PS417_27545 0.74 +0.2 5,943,829 + +0.4 5,943,830 - +0.4 5,943,830 - +0.3 5,943,832 + +0.9 5,943,833 - +0.0 5,943,833 - -0.2 5,943,833 - -0.6 5,943,837 - -0.2 5,943,837 - -0.8 5,943,909 - +0.2 5,943,910 + +0.7 5,943,910 + +0.3 5,943,910 + -0.1 5,943,911 - +0.2 5,943,911 - -1.4 5,943,911 - -1.2
Or see this region's nucleotide sequence