Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0453

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0451 and Echvi_0452 are separated by 8 nucleotidesEchvi_0452 and Echvi_0453 are separated by 199 nucleotidesEchvi_0453 and Echvi_0454 overlap by 14 nucleotidesEchvi_0454 and Echvi_0455 are separated by 2 nucleotides Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504 _0451 Echvi_0452: Echvi_0452 - hypothetical protein, at 495,513 to 496,055 _0452 Echvi_0453: Echvi_0453 - RNA polymerase sigma factor, sigma-70 family, at 496,255 to 496,812 _0453 Echvi_0454: Echvi_0454 - Tetratricopeptide repeat., at 496,799 to 497,521 _0454 Echvi_0455: Echvi_0455 - Uncharacterized protein conserved in bacteria, at 497,524 to 500,526 _0455 Position (kb) 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 495.264 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.308 kb on + strand, within Echvi_0451at 495.309 kb on - strand, within Echvi_0451at 495.355 kb on - strand, within Echvi_0451at 495.424 kb on - strandat 495.507 kb on + strandat 495.519 kb on - strandat 495.589 kb on + strand, within Echvi_0452at 495.745 kb on + strand, within Echvi_0452at 495.787 kb on - strand, within Echvi_0452at 495.787 kb on - strand, within Echvi_0452at 495.788 kb on + strand, within Echvi_0452at 495.788 kb on + strand, within Echvi_0452at 495.789 kb on - strand, within Echvi_0452at 495.789 kb on - strand, within Echvi_0452at 495.820 kb on + strand, within Echvi_0452at 495.889 kb on + strand, within Echvi_0452at 495.899 kb on + strand, within Echvi_0452at 495.900 kb on - strand, within Echvi_0452at 495.907 kb on - strand, within Echvi_0452at 495.925 kb on + strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.926 kb on - strand, within Echvi_0452at 495.972 kb on - strand, within Echvi_0452at 496.124 kb on + strandat 496.156 kb on + strandat 496.156 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.158 kb on + strandat 496.159 kb on - strandat 496.159 kb on - strandat 496.192 kb on + strandat 496.192 kb on + strandat 496.230 kb on + strandat 496.238 kb on - strandat 496.252 kb on + strandat 496.287 kb on - strandat 496.290 kb on + strandat 496.291 kb on - strandat 496.291 kb on - strandat 496.321 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.323 kb on + strand, within Echvi_0453at 496.324 kb on - strand, within Echvi_0453at 496.363 kb on + strand, within Echvi_0453at 496.368 kb on + strand, within Echvi_0453at 496.380 kb on + strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.381 kb on - strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.412 kb on + strand, within Echvi_0453at 496.413 kb on - strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.415 kb on + strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.416 kb on - strand, within Echvi_0453at 496.433 kb on + strand, within Echvi_0453at 496.497 kb on + strand, within Echvi_0453at 496.541 kb on + strand, within Echvi_0453at 496.541 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.568 kb on + strand, within Echvi_0453at 496.589 kb on - strand, within Echvi_0453at 496.682 kb on - strand, within Echvi_0453at 496.727 kb on - strand, within Echvi_0453at 496.746 kb on - strand, within Echvi_0453at 496.770 kb on - strandat 496.778 kb on + strandat 496.799 kb on - strandat 496.799 kb on - strandat 497.027 kb on + strand, within Echvi_0454at 497.027 kb on + strand, within Echvi_0454at 497.027 kb on + strand, within Echvi_0454at 497.046 kb on + strand, within Echvi_0454at 497.046 kb on + strand, within Echvi_0454at 497.050 kb on - strand, within Echvi_0454at 497.077 kb on + strand, within Echvi_0454at 497.077 kb on + strand, within Echvi_0454at 497.077 kb on + strand, within Echvi_0454at 497.080 kb on + strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.081 kb on - strand, within Echvi_0454at 497.083 kb on - strand, within Echvi_0454at 497.108 kb on + strand, within Echvi_0454at 497.108 kb on + strand, within Echvi_0454at 497.109 kb on - strand, within Echvi_0454at 497.110 kb on + strand, within Echvi_0454at 497.110 kb on + strand, within Echvi_0454at 497.111 kb on - strand, within Echvi_0454at 497.118 kb on - strand, within Echvi_0454at 497.129 kb on + strand, within Echvi_0454at 497.205 kb on + strand, within Echvi_0454at 497.206 kb on - strand, within Echvi_0454at 497.207 kb on + strand, within Echvi_0454at 497.208 kb on - strand, within Echvi_0454at 497.241 kb on + strand, within Echvi_0454at 497.277 kb on - strand, within Echvi_0454at 497.277 kb on - strand, within Echvi_0454at 497.289 kb on - strand, within Echvi_0454at 497.378 kb on - strand, within Echvi_0454at 497.562 kb on + strandat 497.562 kb on + strandat 497.562 kb on + strandat 497.563 kb on - strandat 497.569 kb on + strandat 497.570 kb on - strandat 497.570 kb on - strandat 497.603 kb on + strandat 497.777 kb on + strandat 497.778 kb on - strandat 497.781 kb on + strandat 497.783 kb on + strandat 497.783 kb on + strandat 497.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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495,264 + Echvi_0451 0.81 -0.7
495,308 + Echvi_0451 0.85 -0.6
495,308 + Echvi_0451 0.85 +0.7
495,308 + Echvi_0451 0.85 +0.8
495,308 + Echvi_0451 0.85 +0.1
495,309 - Echvi_0451 0.85 +0.7
495,355 - Echvi_0451 0.88 -0.6
495,424 - +0.3
495,507 + -3.4
495,519 - -0.4
495,589 + Echvi_0452 0.14 -1.8
495,745 + Echvi_0452 0.43 -0.7
495,787 - Echvi_0452 0.50 +0.9
495,787 - Echvi_0452 0.50 -2.4
495,788 + Echvi_0452 0.51 -0.5
495,788 + Echvi_0452 0.51 +0.0
495,789 - Echvi_0452 0.51 -0.6
495,789 - Echvi_0452 0.51 +0.6
495,820 + Echvi_0452 0.57 +1.8
495,889 + Echvi_0452 0.69 +1.9
495,899 + Echvi_0452 0.71 +0.7
495,900 - Echvi_0452 0.71 -1.1
495,907 - Echvi_0452 0.73 -0.8
495,925 + Echvi_0452 0.76 +0.4
495,926 - Echvi_0452 0.76 -1.1
495,926 - Echvi_0452 0.76 -0.7
495,972 - Echvi_0452 0.85 +0.7
496,124 + -0.1
496,156 + +1.3
496,156 + +0.8
496,158 + +1.9
496,158 + +1.0
496,158 + -3.0
496,159 - +0.4
496,159 - -0.2
496,192 + -2.5
496,192 + +0.6
496,230 + -2.3
496,238 - -1.9
496,252 + +0.4
496,287 - -0.1
496,290 + -1.4
496,291 - -0.9
496,291 - -0.1
496,321 + Echvi_0453 0.12 +0.3
496,323 + Echvi_0453 0.12 +0.2
496,323 + Echvi_0453 0.12 -0.7
496,324 - Echvi_0453 0.12 -0.5
496,363 + Echvi_0453 0.19 +0.7
496,368 + Echvi_0453 0.20 -1.7
496,380 + Echvi_0453 0.22 -0.0
496,381 - Echvi_0453 0.23 -0.3
496,381 - Echvi_0453 0.23 -0.8
496,381 - Echvi_0453 0.23 -1.4
496,381 - Echvi_0453 0.23 -2.4
496,412 + Echvi_0453 0.28 -1.9
496,412 + Echvi_0453 0.28 -2.1
496,413 - Echvi_0453 0.28 +1.9
496,415 + Echvi_0453 0.29 -2.2
496,415 + Echvi_0453 0.29 +1.1
496,416 - Echvi_0453 0.29 -0.4
496,416 - Echvi_0453 0.29 -2.5
496,416 - Echvi_0453 0.29 -0.1
496,433 + Echvi_0453 0.32 +1.4
496,497 + Echvi_0453 0.43 +0.9
496,541 + Echvi_0453 0.51 -1.8
496,541 + Echvi_0453 0.51 -0.5
496,568 + Echvi_0453 0.56 +0.3
496,568 + Echvi_0453 0.56 -0.3
496,568 + Echvi_0453 0.56 -0.5
496,568 + Echvi_0453 0.56 +1.3
496,589 - Echvi_0453 0.60 +1.0
496,682 - Echvi_0453 0.77 +0.5
496,727 - Echvi_0453 0.85 -0.6
496,746 - Echvi_0453 0.88 +0.2
496,770 - +0.3
496,778 + -1.3
496,799 - -3.5
496,799 - +0.6
497,027 + Echvi_0454 0.32 -1.7
497,027 + Echvi_0454 0.32 +0.8
497,027 + Echvi_0454 0.32 +2.2
497,046 + Echvi_0454 0.34 -1.1
497,046 + Echvi_0454 0.34 -0.1
497,050 - Echvi_0454 0.35 +0.1
497,077 + Echvi_0454 0.38 +0.7
497,077 + Echvi_0454 0.38 +0.8
497,077 + Echvi_0454 0.38 -1.5
497,080 + Echvi_0454 0.39 -0.1
497,081 - Echvi_0454 0.39 -1.8
497,081 - Echvi_0454 0.39 -1.8
497,081 - Echvi_0454 0.39 +0.6
497,081 - Echvi_0454 0.39 +0.9
497,083 - Echvi_0454 0.39 -1.1
497,108 + Echvi_0454 0.43 +0.3
497,108 + Echvi_0454 0.43 -1.1
497,109 - Echvi_0454 0.43 +0.6
497,110 + Echvi_0454 0.43 -1.8
497,110 + Echvi_0454 0.43 -1.8
497,111 - Echvi_0454 0.43 -0.6
497,118 - Echvi_0454 0.44 +0.5
497,129 + Echvi_0454 0.46 +0.1
497,205 + Echvi_0454 0.56 -0.3
497,206 - Echvi_0454 0.56 -1.7
497,207 + Echvi_0454 0.56 +0.3
497,208 - Echvi_0454 0.57 +1.2
497,241 + Echvi_0454 0.61 +1.1
497,277 - Echvi_0454 0.66 +0.7
497,277 - Echvi_0454 0.66 +0.3
497,289 - Echvi_0454 0.68 -0.3
497,378 - Echvi_0454 0.80 -0.4
497,562 + -0.2
497,562 + +0.5
497,562 + +0.3
497,563 - -2.0
497,569 + -0.5
497,570 - +0.3
497,570 - -0.7
497,603 + +1.1
497,777 + +1.6
497,778 - +0.1
497,781 + +0.3
497,783 + +0.2
497,783 + +0.3
497,784 - +0.9

Or see this region's nucleotide sequence